| Issue Date | Title | Author(s) | Source | scopus | WOS | Fulltext/Archive link |
| 2006 | Analyses of the Ribosomal Internal Transcribed Spacers (ITS) and the 5.8S Gene Indicate that Extremely High rDNA Heterogeneity is a Unique Feature in the Scleractinian Coral Genus Acropora (Scleractinia; Acroporidae) | Wei, Nu-Wei Vivian; Wallace, Carden C.; Dai, Chang-Feng ; Kamla Ruby Moothien Pillay; Chen, Chaolun Allen | Zoological Studies | 71 | 66 |  |
| 2008 | Analysis of Acropora muricata Calmodulin (CaM) Indicates That Scleractinian Corals Possess the Ancestral Exon/Intron Organization of the Eumetazoan CaM Gene | Chiou, Chih-Yung; Chen, I-Ping; Chen, Chienhsun; Wu, Henry Ju-Lin; Wei, Nuwei Vivian; Wallace, Carden C.; Chen, Chaolun Allen | Journal of Molecular Evolution | 10 | 9 | |
| 2009 | Comparative Analyses of Coding and Noncoding DNA Regions Indicate that Acropora (Anthozoa: Scleractina) Possesses a Similar Evolutionary Tempo of Nuclear vs. Mitochondrial Genomes as in Plants | Chen, I.-Ping; Tang, Chung-Yu; Chiou, Chih-Yung; Hsu, Jia-Ho; Wei, Nuwei Vivian; Wallace, Carden C.; Muir, Paul; Wu, Henry; Chen, Chaolun Allen | Marine Biotechnology | 56 | 47 | |
| 2012 | Dark survival of Oulastrea crispata | VIANNEY DENIS ; LEUNG, Julia Ka Lai; HSU, Chia-Min; HSIEH, Hernyi Justin; TSAI, Wan-Sen; CHEN, Chaolun Allen | Galaxea, Journal of Coral Reef Studies | 0 | 0 | |
| 2001 | Distribution and Sexual Reproduction of a Seagrass-bed-inhabiting Actiniarian, Phymanthus strandesi (Cnidaria: Anthozoa: Actiniaria: Phymanthidae), at Hsiao-Liuchiu Island, Taiwan | Lin, Ming-Doun; Chen, Chaolun Allen; Fang, Lee-Sing | Zoological Studies | | | |
| 2013 | DNA barcoding reveals the coral "laboratory-rat", Stylophora pistillata encompasses multiple identities | Keshavmurthy, Shashank; Yang, Sung-Yin; Alamaru, Ada; Chuang, Yao-Yang; Pichon, Michel; Obura, David; Fontana, Silvia; De Palmas, Stephane; Stefani, Fabrizio; Benzoni, Francesca; MacDonald, Angus; Noreen, Annika M E; Chen, Chienshun; Wallace, Carden C; Pillay, Ruby Moothein; VIANNEY DENIS ; Amri, Affendi Yang; Reimer, James D; Mezaki, Takuma; Sheppard, Charles; Loya, Yossi; Abelson, Avidor; Mohammed, Mohammed Suleiman; Baker, Andrew C; Mostafavi, Pargol Ghavam; Suharsono, Budiyanto A; Chen, Chaolun Allen | Scientific reports | 82 | 77 | |
| 2000 | The ETS/IGS Region in a Lower Animal, the Seawhip, Junceella fragilis (Cnidaria: Anthozoa: Octocorallia): Compactness, Low Variation and Apparent Conservation of a Pre-rRNA Processing Signal with Fungi | Chen, Chaolun Allen; Miller, David J.; Wei, Nuwei Vivian; Dai, Chang-Feng ; Yang, Hsiao-Pei | Zoological Studies | 8 | | |
| 2005 | Fluctuating algal symbiont communities in Acropora palifera (Scleractinia: Acroporidae) from Taiwan | Chen, Chaolun Allen; Wang, Jih-Terng; Fang,Lee-Shing; Yang, Ya-Wen | Marine Ecology Progress Series | 103 | 101 | |
| 2017 | A functional approach to the structural complexity of coral assemblages based on colony morphological features | VIANNEY DENIS ; Ribas-Deulofeu, Lauriane; Sturaro, Nicolas; Kuo, Chao-Yang; Chen, Chaolun Allen | Scientific reports | 45 | 42 | |
| 2002 | Genetic variation of the viviparid snail, Sinotaia quadrata (Gastropod: Viviparidae), in Taiwan | Chiu, Yuh-Wen; Chen, Chaolun Allen; Chen, Hon-Cheng | Acta Zoologica Taiwanica | | | |
| 2002 | Genotyping the Clonal Population Structure of a Gorgonian Coral, Junceella fragilis (Anthozoa: Octocorallia: Ellisellidae) from Lanyu, Taiwan, Using Simple Sequence Repeats in Ribosomal Intergenic Spacer | Chen, Chaolun Allen; Wei, Nuwei Vivian; Dai, Chang-Feng | Zoological Studies | 8 | | |
| 2014 | Identification of scleractinian coral recruits using fluorescent censusing and DNA barcoding techniques | Hsu, Chia-Min; de Palmas, Stéphane; Kuo, Chao-Yang; VIANNEY DENIS ; Chen, Chaolun Allen | PloS one | 19 | 20 | |
| 2008 | Isolation and characteristics of 10 microsatellite markers from the endangered coconut crab (Birgus latro) | GAN, CHAI-HSIA; TEE, SEE-MIN; TANG, PEI-CIAO; YANG, JAY MING-CHE; FREIRE, FRANCIS; MCGOWAN, ANDREW; NARRIMAN, JIDDAWI; MOHAMMED, MOHAMMED SULEIMAN; HSIEH, HWEY-LIAN; CHEN, CHANG-PO; SHEPPARD, CHARLES; CHEN, CHAOLUN ALLEN | Molecular Ecology Resources | | | |
| 2023 | Jeju Island: a sentinel for tracking ocean warming impacts on high-latitude benthic communities | Ribas-Deulofeu, Lauriane; Loubeyres, Mathilde; VIANNEY DENIS ; De Palmas, Stéphane; Hwang, Sung Jin; Woo, Seonock; Song, Jun Im; Chen, Chaolun Allen | Coral Reefs | | | |
| 2012 | Larval development of fertilized "pseudo-gynodioecious" eggs suggests a sexual pattern of gynodioecy in galaxea fascicularis (Scleractinia: Euphyllidae) | Keshavmurthy, Shashank; Hsu, Chia Min; Kuo, Chao Yang; VIANNEY DENIS ; Leung, Julia Ka Lai; Fontana, Silvia; Hsieh, Hernyi Justin; Tsai, Wan Sen; Su, Wei Cheng; Chen, Chaolun Allen | Zoological Studies | 14 | | |
| 2004 | Local phase shift from Acropora-dominant to Condylactis-dominant community in the Tiao-Shi Reef, Kenting National Park, southern Taiwan | CHANG-FENG DAI ; Chen, Chaolun Allen; Dai, Chang-Feng | Coral Reefs | 36 | 36 | |
| 2008 | Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (Order Scleractinia, Class anthozoa, phylum cnidaria) | CHANG-FENG DAI ; Fukami, Hironobu; Chen, Chaolun Allen; Budd, Ann F.; Collins, Allen; Wallace, Carden; Chuang, Yao-Yang; Chen, Chienhsun; Dai, Chang-Feng ; Iwao, Kenji; Sheppard, Charles; Knowlton, Nancy; Ahmed, Niyaz | PLoS ONE | 244 | 239 | |
| 2005 | Mitogenomic analysis of Montipora cactus and Anacropora matthai (cnidaria; scleractinia; acroporidae) indicates an unequal rate of mitochondrial evolution among Acroporidae corals | Tseng, Ching-Chih; Wallace, Carden C.; Chen, Chaolun Allen | Coral Reefs | | | |
| 2012 | Molecular evidence shows low species diversity of coral-associated hydroids in Acropora corals | Fontana, Silvia; Keshavmurthy, Shashank; Hsieh, Hernyi Justin; VIANNEY DENIS ; Kuo, Chao-Yang; Hsu, Chia-Ming; Leung, Julia K L; Tsai, Wan-Sen; Wallace, Carden C; Chen, Chaolun Allen | PloS one | 23 | 24 | |
| 2007 | Monospecific Stands of Turbinaria mesenterina in the Pescadores (Penghu), Taiwan: Ecological and Conservational Significance | Hsieh, Hernyi Justin; CHANG-FENG DAI ; Hsu, Chia-Min; Dai, Chang-Feng ; Jeng, Ming-Shui; Tsai, Wan-Shen; Chen, Chaolun Allen | Zoological Studies | | 0 | |
