Results 1-218 of 218 (Search time: 0.016 seconds).

Issue DateTitleAuthor(s)SourcescopusWOSFulltext/Archive link
12024NURECON: A Novel Online System for Determining Nutrition Requirements Based on Microbial CompositionHu, Zhao Qi; Hung, Yuan Mao; LI-HAN CHEN ; LIANG-CHUAN LAI ; MIN-HSIUNG PAN ; ERIC YAO-YU CHUANG ; MONG-HSUN TSAI IEEE/ACM Transactions on Computational Biology and Bioinformatics
22024The largest genome-wide association study for breast cancer in Taiwanese Han populationHsu, Yu Ching; Chen, Hung Lin; Cheng, Chi Fung; Chattopadhyay, Amrita; Chen, Pei Shan; Lin, Che Chen; Chiang, Hsiu Yin; Liu, Ting Yuan; Huang, Chi Hao; Kuo, Chin Chi; ERIC YAO-YU CHUANG ; TZU-PIN LU ; Tsai, Fuu JenBreast Cancer Research and Treatment00
32023Twnbiome: a public database of the healthy Taiwanese gut microbiomeChattopadhyay, Amrita; Lee, Chien Yueh; Lee, Ya Chin; Liu, Chiang Lin; Chen, Hsin Kuang; Li, Yung Hua; LIANG-CHUAN LAI ; MONG-HSUN TSAI; YEN-HSUAN NI ; HAN-MO CHIU ; TZU-PIN LU ; ERIC YAO-YU CHUANG BMC Bioinformatics0
42023Multi-ethnic Imputation System (MI-System): A genotype imputation server for high-dimensional dataChattopadhyay, Amrita; Lee, Chien-Yueh; Shen, Ying-Cheng; Lu, Kuan-Chen; Hsiao, Tzu-Hung; Lin, Ching-Heng; LIANG-CHUAN LAI ; Tsai, Mong-Hsun; TZU-PIN LU ; ERIC YAO-YU CHUANG Journal of biomedical informatics11
52023Utilizing multimodal approach to identify candidate pathways and biomarkers and predicting frailty syndrome in individuals from UK BiobankTseng, Watson Hua Sheng; Chattopadhyay, Amrita; Phan, Nam Nhut; ERIC YAO-YU CHUANG ; Lee, Oscar K.GeroScience00
62023An Oral Microbial Biomarker for Early Detection of Recurrence of Oral Squamous Cell CarcinomaLyu, Wei Ni; MEI-CHUN LIN ; Shen, Cheng Ying; LI-HAN CHEN; Lee, Yung Hua; Chen, Shin Kuang; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG ; PEI-JEN LOU ; MONG-HSUN TSAI ACS Infectious Diseases30
72022CLIN_SKAT: an R package to conduct association analysis using functionally relevant variantsChattopadhyay, Amrita; Shih, Ching-Yu; Hsu, Yu-Chen; JYH-MING JIMMY JUANG ; ERIC YAO-YU CHUANG ; TZU-PIN LU BMC Bioinformatics00
82022Extracellular domain of semaphorin 5A serves a tumor‑suppressing role by activating interferon signaling pathways in lung adenocarcinoma cellsChen, Ming Zhen; Su, Li Yu; Ko, Pin Hao; Hsu, Ming Hsuan; Chuang, Li Ling; LI-HAN CHEN ; TZU-PIN LU ; ERIC YAO-YU CHUANG ; LU-PING CHOW ; MONG-HSUN TSAI ; HSAO-HSUN HSU ; LIANG-CHUAN LAI International journal of oncology10
92022An Artificial Intelligence-Enabled ECG Algorithm for the Prediction and Localization of Angiography-Proven Coronary Artery DiseasePANG-SHUO HUANG ; Tseng Y.-H.; Tsai C.-F.; JIEN-JIUN CHEN ; Yang S.-C.; Chiu F.-C.; ZHENG-WEI CHEN ; HWANG, JUEY-JEN ; ERIC YAO-YU CHUANG ; YI-CHIH WANG ; CHIA-TI TSAI Biomedicines63
102022Lidocaine and Bupivacaine Downregulate MYB and DANCR lncRNA by Upregulating miR-187-5p in MCF-7 CellsLin C.-Y.; Tseng W.-T.; Chang Y.-Y.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG ; TZU-PIN LU ; LIANG-CHUAN LAI Frontiers in Medicine32
112022Join Classifier of Type and Index Mutation on Lung Cancer DNA Using Sequential Labeling ModelWisesty U.N; Purwarianti A; Pancoro A; Chattopadhyay A; Phan N.N; Mengko T.R.; ERIC YAO-YU CHUANG IEEE Access32
122022To compare the performance of prokaryotic taxonomy classifiers using curated 16S full-length rRNA sequencesHung Y.-M.; Lyu W.-N.; Tsai M.-L.; Liu C.-L.; LIANG-CHUAN LAI ; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Computers in Biology and Medicine65
132022The extended concurrent genes signature for disease-free survival in breast cancerHuang C.-S; Tsai M.-L; Lu T.-P; Tu C.-C; Liu C.-Y; Huang C.-J; Ho Y.-S; Tu S.-H; ERIC YAO-YU CHUANG ; Tseng L.-M; Huang C.-C.Journal of the Formosan Medical Association10
142022A major milestone for Translational Cancer Research: indexing in PubMed/PubMed CentralERIC YAO-YU CHUANG Translational Cancer Research00
152022Uremic Toxin-Producing Bacteroides Species Prevail in the Gut Microbiota of Taiwanese CKD Patients: An Analysis Using the New Taiwan Microbiome BaselineShivani, Subhashree; Kao, Cheng-Yen; Chattopadhyay, Amrita; Chen, Jenn-Wei; LIANG-CHUAN LAI ; Lin, Wei-Hung; TZU-PIN LU ; Huang, I-Hsiu; Tsai, Mong-Hsun; Teng, Ching-Hao; Wu, Jiunn-Jong; Hsieh, Yi-Hsien; Wang, Ming-Cheng; ERIC YAO-YU CHUANG Frontiers in cellular and infection microbiology1112
162021High prevalence of APOA1/C3/A4/A5 alterations in luminal breast cancers among young women in East AsiaLIN, CHING-HUNG ; RUBY YUN-JU HUANG ; TZU-PIN LU ; KUAN-TING KUO ; Lo, Ko-Yun; Chen, Ching-Hsuan; I-CHUN CHEN ; YEN-SHEN LU ; ERIC YAO-YU CHUANG ; Thiery, Jean Paul; CHIUN-SHENG HUANG ; ANN-LII CHENG NPJ breast cancer44
172021MutScape: An analytical toolkit for probing the mutational landscape in cancer genomicsLu C.-H.; Wu C.-H.; MONG-HSUN TSAI ; Liang-Chuan Lai ; ERIC YAO-YU CHUANG NAR Genomics and Bioinformatics00
182021Evolutionary trajectories and genomic divergence in localized breast cancers after ipsilateral breast tumor recurrenceWu C.-H.; Yeh H.-T.; Hsieh C.-S.; Huang C.-C.; Chattopadhyay A.; Chung Y.-C.; Tu S.-H.; Li Y.-H.; TZU-PIN LU ; LIANG-CHUAN LAI ; Hou M.-F.; KING-JEN CHANG ; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Cancers31
192021Regulatory Mechanisms and Functional Roles of Hypoxia-Induced Long Non-Coding RNA MTORT1 in Breast Cancer CellsCheng Y.-C.; Su L.-Y.; LI-HAN CHEN ; TZU-PIN LU ; ERIC YAO-YU CHUANG ; MONG-HSUN TSAI ; Chuang L.-L.; LIANG-CHUAN LAI Frontiers in Oncology88
202021Predicting Breast Cancer Gene Expression Signature by Applying Deep Convolutional Neural Networks From Unannotated Pathological ImagesPhan N.N; Huang C.-C; Tseng L.-M; ERIC YAO-YU CHUANG Frontiers in Oncology22
212021EasyMAP: A user-friendly online platform for analyzing 16S ribosomal DNA sequencing dataHung Y.-M.; TZU-PIN LU ; Tsai M.-H.; Liang-Chuan Lai ; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG New Biotechnology66
222021Prediction of Breast Cancer Recurrence Using a Deep Convolutional Neural Network Without Region-of-Interest LabelingPhan N.N; Hsu C.-Y; Huang C.-C; Tseng L.-M; Chuang E.Y.; ERIC YAO-YU CHUANG Frontiers in Oncology64
232021Differential whole-genome doubling and homologous recombination deficiencies across breast cancer subtypes from the Taiwanese populationWu, Chia-Hsin; Hsieh, Chia-Shan; Chang, Yo-Cheng; Huang, Chi-Cheng; Yeh, Hsien-Tan; Hou, Ming-Feng; Chung, Yuan-Chiang; Tu, Shih-Hsin; KING-JEN CHANG ; Chattopadhyay A.; Liang-Chuan Lai ; TZU-PIN LU ; Li, Yung-Hua; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Communications Biology22
242021ATTRACTIVE - An Auto-Updating Database for Experimental Protocols in Regenerative MedicineHung Y.-M.; Tsai M.-H.; Liang-Chuan Lai ; ERIC YAO-YU CHUANG ; MONG-HSUN TSAI IEEE Access00
252021Hypoxia-Induced MALAT1 Promotes the Proliferation and Migration of Breast Cancer Cells by Sponging MiR-3064-5pShih C.-H.; Chuang L.-L.; MONG-HSUN TSAI ; LI-HAN CHEN ; ERIC YAO-YU CHUANG ; TZU-PIN LU ; LIANG-CHUAN LAI Frontiers in Oncology2627
262021Novel Tumor-Specific Antigens for Immunotherapy Identified From Multi-omics Profiling in Thymic CarcinomasFang W.; Wu C.-H.; Sun Q.-L.; Gu Z.-T.; Zhu L.; Mao T.; Zhang X.-F.; Xu N.; TZU-PIN LU ; MONG-HSUN TSAI ; LI-HAN CHEN ; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG Frontiers in Immunology42
272021High-performance deep learning pipeline predicts individuals in mixtures of DNA using sequencing dataPhan, Nam Nhut; Chattopadhyay, Amrita; Lee, Tsui-Ting; Yin, Hsiang-I; TZU-PIN LU ; Liang-Chuan Lai ; HSIAO-LIN HWA ; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Briefings in bioinformatics10
282021CNVIntegrate: The first multi-ethnic database for identifying copy number variations associated with cancerChattopadhyay A.; Teoh Z.H.; Wu C.-Y.; JYH-MING JIMMY JUANG ; Liang-Chuan Lai ; MONG-HSUN TSAI ; Wu C.-H.; TZU-PIN LU ; ERIC YAO-YU CHUANG Database53
292021MiDSystem: A comprehensive online system for de novo assembly and analysis of microbial genomesLee C.-Y.; Lee Y.-F.; Liang-Chuan Lai ; Tsai M.-H.; TZU-PIN LU ; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG New Biotechnology22
302021RNASeqR: An R Package for Automated Two-Group RNA-Seq Analysis WorkflowKuan-Hao Chao; Yi-Wen Hsiao; Yi-Fang Lee; Chien-Yueh Lee; Liang-Chuan Lai ; Mong-Hsun Tsai; TZU-PIN LU ; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG IEEE/ACM Transactions on Computational Biology and Bioinformatics55
312020Comparison of DNA stabilizers and storage conditions on preserving fecal microbiota profilesCHIEH-CHANG CHEN ; WEI-KAI WU ; Chang, Chih-Min; Panyod, Suraphan; TZU-PIN LU ; JYH-MING LIOU ; YU-JEN FANG ; ERIC YAO-YU CHUANG ; MING-SHIANG WU Journal of the Formosan Medical Association = Taiwan yi zhi1813
322020Validation and Disease Risk Assessment of Previously Reported Genome-Wide Genetic Variants Associated With Brugada Syndrome: SADS-TW BrS RegistryJYH-MING JIMMY JUANG ; YEN BIN LIU ; Julius Chen, Ching-Yu; Yu, Qi-You; Chattopadhyay, Amrita; LIAN-YU LIN ; WEN-JONE CHEN ; CHIH-CHIEH YU ; HUI-CHUN HUANG ; LI-TING HO ; LING-PING LAI ; HWANG, JUEY-JEN ; TING TSE LIN ; MIN-TSUN LIAO ; JIEN-JIUN CHEN ; Sherri Yeh, Shih-Fan; Chuang, Jing-Yuan; Yang, Dun-Hui; JIUNN-LEE LIN ; TZU-PIN LU ; ERIC YAO-YU CHUANG Circulation. Genomic and precision medicine1715
332020GSTM3 variant is a novel genetic modifier in Brugada syndrome, a disease with risk of sudden cardiac deathJYH-MING JIMMY JUANG ; Binda, Anna; Lee, Shyh-Jye; HWANG, JUEY-JEN ; WEN-JONE CHEN ; YEN BIN LIU ; LIAN-YU LIN ; CHIH-CHIEH YU ; LI-TING HO ; HUI-CHUN HUANG ; Chen, Ching-Yu Julius; TZU-PIN LU ; Liang-Chuan Lai ; Yeh, Shih-Fan Sherri; LING-PING LAI ; Chuang, Eric Y; Rivolta, Ilaria; SHYH-JYE LEE ; ERIC YAO-YU CHUANG EBioMedicine1312
342020Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: applications to cardiovascular medicineJYH-MING JIMMY JUANG ; TZU-PIN LU ; Su, Ming-Wei; Lin, Chien-Wei; Yang, Jenn-Hwai; Chu, Hou-Wei; Chen, Chien-Hsiun; Hsiao, Yi-Wen; Lee, Chien-Yueh; Chiang, Li-Mei; Yu, Qi-You; CHUHSING KATE HSIAO ; Julius Chen, Ching-Yu; Wu, Pei-Ei; Pai, Chien-Hua; ERIC YAO-YU CHUANG ; Shen, Chen-YangJournal of Advanced Research1111
352020The puzzle of genetics in brugada syndrome: A disease with a high risk of sudden cardiac death in young peopleChen C.-Y.J; Chuang E.Y.; ERIC YAO-YU CHUANG Annals of Palliative Medicine10
362020Semaphorin 5A suppresses the proliferation and migration of lung adenocarcinoma cellsKo, P.-H.; Lenka, G.; Chen, Y.-A.; ERIC YAO-YU CHUANG ; MONG-HSUN TSAI ; Sher, Y.-P.; LIANG-CHUAN LAI International Journal of Oncology97
372020IL-27/IL-27RA signaling may modulate inflammation and progression of benign prostatic hyperplasia via suppressing the LPS/TLR4 pathwayLo, H.-C.; Yu, D.-S.; Gao, H.-W.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Translational Cancer Research22
382020MicroRNA-107 enhances radiosensitivity by suppressing granulin in PC-3 prostate cancer cellsLo, H.-C.; Hsu, J.-H.; Liang-Chuan Lai ; Tsai, M.-H.; ERIC YAO-YU CHUANG ; MONG-HSUN TSAI Scientific Reports139
392020Prevalence of sudden arrhythmic death syndrome-related genetic mutations in an Asian cohort of whole genome sequencePANG-SHUO HUANG ; Hsieh, C.-S.; SHENG-NAN CHANG ; JIEN-JIUN CHEN ; Chiu, F.-C.; CHO-KAI WU ; HWANG, JUEY-JEN ; ERIC YAO-YU CHUANG ; CHIA-TI TSAI Europace21
402019Altered gut microbiota and inflammatory cytokine responses in patients with Parkinson's diseaseCHIN-HSIEN LIN ; CHIEH-CHANG CHEN ; Chiang, Han-Lin; JYH-MING LIOU ; Chang, Chih-Min; TZU-PIN LU ; ERIC YAO-YU CHUANG ; Tai, Yi-Cheng; Chieh-Lung Cheng ; Lin, Han-Yi; MING-SHIANG WU Journal of neuroinflammation255234
412019anamiR: integrated analysis of MicroRNA and gene expression profilingWang, Ti-Tai; Lee, Chien-Yueh; LIANG-CHUAN LAI ; MONG-HSUN TSAI ; TZU-PIN LU ; ERIC YAO-YU CHUANG BMC bioinformatics1013
422019Genome-Wide Copy Number Variation Association Study of Atrial Fibrillation Related Thromboembolic StrokeHsieh, Chia-Shan; PANG-SHUO HUANG ; SHENG-NAN CHANG ; CHO-KAI WU ; JUEY-JEN HWANG ; ERIC YAO-YU CHUANG ; CHIA-TI TSAI Journal of clinical medicine1110
432019Identifying the functions and biomarkers of Codonopsis pilosula and Astragalus membranaceus aqueous extracts in hepatic cellsKo, P.-H.; Huang, C.-W.; Chang, H.-H.; ERIC YAO-YU CHUANG ; MONG-HSUN TSAI ; LIANG-CHUAN LAI Chinese Medicine (United Kingdom)109
442019Long-term changes of gut microbiota, antibiotic resistance, and metabolic parameters after Helicobacter pylori eradication: a multicentre, open-label, randomised trialJYH-MING LIOU ; CHIEH-CHANG CHEN ; Chang, C.-M.; YU-JEN FANG ; Bair, M.-J.; Chen, P.-Y.; Chang, C.-Y.; Hsu, Y.-C.; MEI-JYH CHEN ; CHIEN-CHUAN CHEN ; Lee, J.-Y.; Yang, T.-H.; Luo, J.-C.; Chen, C.-Y.; WEN-FENG HSU ; YEN-NIEN CHEN ; Wu, J.-Y.; Lin, J.-T.; TZU-PIN LU ; Chuang, E.Y.; El-Omar, E.M.; MING-SHIANG WU ; Taiwan Gastrointestinal Disease; ERIC YAO-YU CHUANG The Lancet Infectious Diseases125111
452019Macrophage Migration Inhibitory Factor Acts as the Potential Target of a Newly Synthesized Compound, 1-(9′-methyl-3′-carbazole)-3, 4-dihydro-β-carbolineKo P.-H; Shen Y.-C; Murugan K; Huang C.-W; Sivakumar G; Pal P; Liao C.-C; Luo K.-S; ERIC YAO-YU CHUANG ; MONG-HSUN TSAI ; LIANG-CHUAN LAI Scientific Reports45
462019Using proteomic profiling to characterize protein signatures of different thymoma subtypesLIANG-CHUAN LAI ; Sun, Qiang Ling; Chen, Y.-A.; MONG-HSUN TSAI ; TZU-PIN LU ; Hsiao, Yi Wen; Sun, Qiang Ling; Chuang, E.Y.; ERIC YAO-YU CHUANG BMC Cancer53
472019Role of artificial intelligence in integrated analysis of multi-omics and imaging data in cancer researchPhan, N.N.; Chattopadhyay, A.; ERIC YAO-YU CHUANG Translational Cancer Research33
482019Semaphorin 6A Attenuates the Migration Capability of Lung Cancer Cells via the NRF2/HMOX1 AxisChen, L.-H.; Liao, C.-Y.; LIANG-CHUAN LAI ; Tsai, M.-H.; ERIC YAO-YU CHUANG ; LI-HAN CHEN ; MONG-HSUN TSAI Scientific Reports2420
492019VariED: The first integrated database of gene annotation and expression profiles for variants related to human diseasesLee, Chien Yueh; Chattopadhyay, A.; Chattopadhyay, Amrita; JYH-MING JIMMY JUANG ; LIANG-CHUAN LAI ; Chuang, Eric Y.; TZU-PIN LU ; MONG-HSUN TSAI ; Lee, Chien Yueh; LIANG-CHUAN LAI; Chattopadhyay, Amrita; Chiang, Li Mei; JYH-MING JIMMY JUANG; Chuang, Eric Y.; TZU-PIN LU; ERIC YAO-YU CHUANG Database54
502018Utilizing Cancer–Functional Gene set–Compound Networks to Identify Putative Drugs for Breast CancerT.H. Hsiao; Y.H. Chen; H.I. Chen; Y.C. Chiu; E.Y. Chuang; Y. Chen; ERIC YAO-YU CHUANG Combinatorial Chemistry & High Throughput Screening11
512018The hypoxia-responsive lncRNA NDRG-OT1 promotes NDRG1 degradation via ubiquitin-mediated proteolysis in breast cancer cellsLin, H.-C.; Yeh, C.-C.; Chao, L.-Y.; MONG-HSUN TSAI ; Chen, H.-H.; ERIC YAO-YU CHUANG ; LIANG-CHUAN LAI Oncotarget290
522018miR-338-5p modulates growth and chemoresistance of esophageal cancer cell via targeting FERRMT2Lin, Wen-chun; Hsieh, Yao-chin; Chen, Li-han; Yang, Pei-wen; Huang, Chi-Cheng; Lai, Liang-chuan; Lee, Jang-ming; Chuang, Eric Yao-yu; Tsai, Mong-hsun; ERIC YAO-YU CHUANG Cancer Research00
532018Dual immuno-renal targeting of 7-benzylidenenaltrexone alleviates lupus nephritis via FcγRIIB and HO-1Tseng, T.-C.; Huang, D.-Y.; LIANG-CHUAN LAI ; Hwai, H.; Hsiao, Y.-W.; Jhou, J.-P.; Chuang, E.Y.; ERIC YAO-YU CHUANG Journal of Molecular Medicine43
542018Different effects of long noncoding RNA NDRG1-OT1 fragments on NDRG1 transcription in breast cancer cells under hypoxiaYeh, C.-C.; Luo, J.-L.; Nhut Phan, N.; Cheng, Y.-C.; LU-PING CHOW ; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG ; LIANG-CHUAN LAI RNA Biology1616
552018藥物組合療效預測篩選系統與方法劉韋驛; 邱育賢; 徐仁徽; 謝嘉珊; 蔡孟勳; 盧子彬; 賴亮全; 莊曜宇; 蕭暉議; ERIC YAO-YU CHUANG 
562018Global expression profiling identifies a novel hyaluronan synthases 2 gene in the pathogenesis of lower extremity varicose veinsCHIA-SHAN HSIEH; CHIA-TI TSAI ; YAU-HUNG CHEN; SHENG-NAN CHANG ; JUEY-JEN HWANG ; I-HUI WU ; ERIC YAO-YU CHUANG Journal of Clinical Medicine32
572018Analyzing Differential Regulatory Networks Modulated by Continuous-State Genomic Features in Glioblastoma MultiformeChiu, Y.-C.; Hsiao, T.-H.; Wang, L.-J.; Chen, Y.; Chuang, E.Y.; ERIC YAO-YU CHUANG IEEE/ACM Transactions on Computational Biology and Bioinformatics21
582018An automated microfluidic DNA microarray platform for genetic variant detection in inherited arrhythmic diseasesHuang, S.-H.; Chang, Y.-S.; JYH-MING JIMMY JUANG ; Chang, K.-W.; MONG-HSUN TSAI ; TZU-PIN LU ; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG ; NIEN-TSU HUANG Analyst1312
592018Deep sequencing reveals a microRNA expression signature in triple-negative breast cancerChang, Yao-Yin; LIANG-CHUAN LAI ; Tsai, Mong-Hsun; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Methods in Molecular Biology44
602017Prognostic impacts and dynamic changes of cohesin complex gene mutations in de novo acute myeloid leukemiaCHENG-HONG TSAI ; HSIN-AN HOU ; JIH-LUH TANG ; Kuo, Yuan-Yeh; Chiu, Yu-Chiao; CHIEN-CHIN LIN ; Liu, Chieh-Yu; Tseng, Mei-Hsuan; Lin, Tzung-Yi; Liu, Ming-Chih; Liu, Chia-Wen; LIANG-IN LIN ; MING YAO ; Li, Chi-Cheng; SHANG-YI HUANG ; BOR-SHENG KO ; SZU-CHUN HSU ; Lin, Chien-Ting; SHANG-JU WU ; Chen, Chien-Yuan ; WOEI TSAY ; ERIC YAO-YU CHUANG ; WEN-CHIEN CHOU ; HWEI-FANG TIEN Blood Cancer Journal3433
612017D.K. Podolsky, J.J.Y. Yen, J.M. Wong, SHANK3 Regulates Intestinal Barrier Function Through Modulating ZO-1 Expression Through the PKCε-dependent PathwayS.C. Wei; H.F. Yang-Yen; P.N. Tsao; M.T. Weng; C.C. Tung; L.C.H. Yu; L.C. Lai; J.H. Hsiao; E.Y. Chuang; C.T. Shun; Y.H. Ni; R.J. Xavier; ERIC YAO-YU CHUANG Inflammatory Bowel Diseases
622017Genome-wide identification of key modulators of gene-gene interaction networks in breast cancerY.C. Chiu; L.J. Wang; T.H. Hsiao; E.Y. Chuang; Y. Chen; ERIC YAO-YU CHUANG BMC Genomics34
632017別瞎忙了!健康的關鍵就在腸道菌莊曜宇; 王志軒; ERIC YAO-YU CHUANG 別瞎忙了!健康的關鍵就在腸道菌
642017ADAM9 enhances CDCP1 by inhibiting miR-1 through EGFR signaling activation in lung cancer metastasisChiu K.-L; Lin Y.-S; Kuo T.-T; Lo C.-C; Huang Y.-K; Chang H.-F; ERIC YAO-YU CHUANG ; Lin C.-C; Cheng W.-C; Liu Y.-N; LIANG-CHUAN LAI ; Sher Y.-P.Oncotarget2524
652017Genetic loci associated with an earlier age at onset in multiplex schizophreniaWoolston A.L.; Hsiao P.-C.; PO-HSIU KUO ; Wang S.-H.; Lien Y.-J.; CHIH-MIN LIU ; HAI-GWO HWU ; TZU-PIN LU ; ERIC YAO-YU CHUANG ; Chang L.-C.; Chen C.-H.; Wu J.-Y.; Tsuang M.T.; WEI J. CHEN ; HSIU-PO KUO Scientific Reports1210
662017用以分析細菌菌種之定序資料的系統及其方法鄭佳揚; 徐仁徽; 劉韋驛; 蔡孟勳; 盧子彬; 賴亮全; 莊曜宇; ERIC YAO-YU CHUANG 
672017Differential correlation analysis of lioblastoma reveals immune ceRNA interactions predictive of patient survivalChiu Y.-C.; Wang L.-J.; TZU-PIN LU ; Hsiao T.-H.; Chuang E.Y.; Chen Y.; ERIC YAO-YU CHUANG BMC Bioinformatics1313
682017次世代定序分析系統及其次世代定序分析方法鄭少樺; 邱育賢; 莊曜宇; 盧子彬; 董恆元; ERIC YAO-YU CHUANG 
692017SHANK3 Regulates Intestinal Barrier Function Through Modulating ZO-1 Expression Through the PKCϵ-dependent PathwaySHU-CHEN WEI ; Yang-Yen, H.-F.; PO-NIEN TSAO ; Weng, M.-T.; CHIEN-CHIH TUNG ; LINDA CHIA-HUI YU ; LIANG-CHUAN LAI ; Hsiao, J.-H.; Chuang, E.Y.; CHIA-TUNG SHUN ; YEN-HSUAN NI ; Xavier, R.J.; Podolsky, D.K.; Yen, J.J.Y.; ERIC YAO-YU CHUANG Inflammatory Bowel Diseases2119
702016Genome-wide screening identifies a KCNIP1 copy number variant as a genetic predictor for atrial fibrillationCHIA-TI TSAI ; Hsieh, Chia-Shan; SHENG-NAN CHANG ; Chuang, Eric Y; Ueng, Kwo-Chang; Tsai, Chin-Feng; Lin, Tsung-Hsien; CHO-KAI WU ; JEN-KUANG LEE ; LIAN-YU LIN ; YI-CHIH WANG ; CHIH-CHIEH YU ; LING-PING LAI ; Tseng, Chuen-Den; HWANG, JUEY-JEN ; FU-TIEN CHIANG ; JIUNN-LEE LIN ; ERIC YAO-YU CHUANG Nature communications3127
712016Applying gene set analysis to characterize the activities of immune cells in estrogen receptor positive breast cancer.Yi-Hsuan Chang; Yu-Chiao Chiu1; Yu-Ching Hsu; Hui-Mei Tsai; Tzu-Hung Hsiao; ERIC YAO-YU CHUANG Translational Cancer Research12
722016Overexpression of methylation-driven DCC suppresses proliferation of lung cancer cellsGovinda Lenka; Mong-Hsun Tsai; Jen-Hao Hsiao; LIANG-CHUAN LAI ; Chuang E.Y.; ERIC YAO-YU CHUANG Translational Cancer Research44
732016A simple gene set-based analysis accurately predicts the synergy of drug pairs.Yu-Ching Hsu; Yu-Chiao Chiu; Wei-Yi Liu; Chia-Yang Cheng; Tzu-Hung Hsiao; Mong-Hsun Tsai; ERIC YAO-YU CHUANG BMC Systems Biology
742016Prognostic significance of NPM1 mutation-modulated microRNA-mRNA regulation in acute myeloid leukemiaChiu Y.-C.; MONG-HSUN TSAI ; WEN-CHIEN CHOU ; Liu Y.-C.; Kuo Y.-Y.; HSIN-AN HOU ; TZU-PIN LU ; LIANG-CHUAN LAI ; Chen Y.; HWEI-FANG TIEN ; ERIC YAO-YU CHUANG Leukemia2121
752016Development of a prediction model for radiosensitivity using the expression values of genes and long non-coding RNAsWang W.-A.; LIANG-CHUAN LAI ; Tsai M.-H.; TZU-PIN LU ; Chuang E.Y.; ERIC YAO-YU CHUANG Oncotarget76
762016Low correlation of lncRNA and target gene expression in microarray dataChi-Yun Wu; Chuang E.Y.; TZU-PIN LU ; ERIC YAO-YU CHUANG Translational Cancer Research00
772016利用三個微小核糖核酸之評分系統以預測急性骨髓性白血病之預後周文堅; 田蕙芬; 莊曜宇; 邱鈺喬; 莊名凱; ERIC YAO-YU CHUANG 
782016A simple gene set-based method accurately predicts the synergy of drug pairsHsu, Y.-C.; Chiu, Y.-C.; Chen, Y.; Hsiao, T.-H.; Chuang, E.Y.; ERIC YAO-YU CHUANG BMC Systems Biology1212
792016Liver gene expression profiles correlate with virus infection and response to interferon therapy in chronic hepatitis B patientsWu H.-L.; Hsiao T.-H.; PEI-JER CHEN ; Wong S.-H.; JIA-HORNG KAO ; DING-SHINN CHEN ; Lu J.-Y.; TZU-PIN LU ; Chen Y.; Chuang E.Y.; Tu H.-C.; CHUN-JEN LIU ; ERIC YAO-YU CHUANG Scientific Reports2322
802016Differential network analysis reveals the genome-wide landscape of estrogen receptor modulation in hormonal cancersHsiao T.-H.; Chiu Y.-C.; Hsu P.-Y.; TZU-PIN LU ; LIANG-CHUAN LAI ; Tsai M.-H.; Huang T.H.-M.; Chuang E.Y.; Chen Y.; ERIC YAO-YU CHUANG Scientific Reports2321
812015An mRNA Expression Signature for Prognostication in De Novo Acute Myeloid Leukemia Patients with Normal Karyotype.ERIC YAO-YU CHUANG Oncotarget 
822015Putative effectors for prognosis in lung adenocarcinoma are ethnic and gender specific.ERIC YAO-YU CHUANG Oncotarget 
832015A gene-set approach to analyze copy number alterations in breast cancer.ERIC YAO-YU CHUANG Translational Cancer Research(TCR)00
842015A 3-microRNA scoring system for prognostication in de novo acute myeloid leukemia patientsMING-KAI CHUANG ; Chiu, Y.-C.; WEN-CHIEN CHOU ; HSIN-AN HOU ; ERIC YAO-YU CHUANG ; HWEI-FANG TIEN Leukemia4648
852015Parameter optimization for constructing competing endogenous RNA regulatory network in glioblastoma multiforme and other cancers.ERIC YAO-YU CHUANG BMC Genomics3426
862015Performances evaluation of algorithms for identifying differently expressed genes in RNA-seq data.ERIC YAO-YU CHUANG AACR 106th Annual Meeting
872015Survival prediction model with long non-coding RNA profile in lung adenocarcinoma cancer.ERIC YAO-YU CHUANG AACR 106th Annual Meeting 2015
882015Patho-finder-A fast and accurate program for pathogen identification through RNA-seqWu, C.-T.; Hsiao, T.-H.; Chiu, Y.-C.; Hsu, Y.-C.; Chuang, E.Y.; Chen, Y.; ERIC YAO-YU CHUANG Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 201500
892015A microarray study of radiation-induced transcriptional responses and the role of Jagged 1 in two closely-related lung cancer cell linesKang, Y.; Chang, Y.-Y.; Liu, Y.-C.; LIANG-CHUAN LAI ; Chuang, E.Y.; ERIC YAO-YU CHUANG Translational Cancer Research22
902015Analyzing differential regulatory networks modulated by continuous-state genomic features in glioblastoma multiformeChiu, Y.-C.; Liang, K.-W.; Hsiao, T.-H.; Chen, Y.; Chuang, E.Y.; ERIC YAO-YU CHUANG Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 201510
912015Putative effectors for prognosis in lung adenocarcinoma are ethnic and gender specificWoolston, A.; Sintupisut, N.; TZU-PIN LU ; LIANG-CHUAN LAI ; Tsai, M.-H.; Chuang, E.Y.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Oncotarget44
922015Deregulated microRNAs in triple-negative breast cancer revealed by deep sequencingChang, Y.-Y.; WEN-HUNG KUO ; Hung J.-H.; Lee C.-Y.; Lee Y.-H.; Chang Y.-C.; Lin W.-C.; Shen C.-Y.; CHIUN-SHENG HUANG ; FON-JOU HSIEH ; LIANG-CHUAN LAI ; Tsai M.-H.; KING-JEN CHANG ; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG et al. Molecular Cancer10499
932015Co-modulation analysis of gene regulation in breast cancer reveals complex interplay between ESR1 and ERBB2 genesChiu Y.-C.; Wu C.-T.; Hsiao T.-H.; Lai Y.-P.; CHUHSING KATE HSIAO ; Chen Y.; ERIC YAO-YU CHUANG BMC Genomics57
942014A Simple, Powerful, and Widely Applicable Micro-RNA Scoring System in Prognostication of De Novo Myeloid Leukemia Patients.ERIC YAO-YU CHUANG 56th ASH® Annual Meeting and Exposition 
952014A Simple, Powerful, and Widely Applicable Micro-RNA Scoring System in Prognostication of De Novo Myeloid Leukemia Patients.ERIC YAO-YU CHUANG Blood 
962014Identification of Gene Expression Biomarkers for Predicting Radiation Exposure.ERIC YAO-YU CHUANG Scientific Reports 
972014MicroRNA-769-3p Down-regulates NDRG1 and Enhances Apoptosis in MCF-7 Cells During Reoxygenation.ERIC YAO-YU CHUANG Scientific Reports 
982014Refinement of breast cancer risk prediction with concordant leading edge subsets from prognostic gene signatures.ERIC YAO-YU CHUANG Breast Cancer Research and Treatment 
992014A reliable multiplex genotyping assay for HCV using a suspension bead array.MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Microbial Biotechnology44
1002014SLCO3A1, a Novel Crohn’s Disease-Associated Gene, Regulates NF-κB Activity and Associates with Intestinal Perforation.ERIC YAO-YU CHUANG PLoS One
1012014Investigation of Dynamic Cross-talk between miRNA and mRNA in Acute Myeloid LeukemiaERIC YAO-YU CHUANG Human Genome Meeting 2014 
1022014SNP rs10248565 in HDAC9 as a novel genomic aberration biomarker of lung adenocarcinoma in non-smoking women.ERIC YAO-YU CHUANG Journal of Biomedical Science 
1032014Utilizing Multiple in Silico Analyses to Identify Putative Causal SCN5A Variants in Brugada Syndrome.JYH-MING JIMMY JUANG ; TZU-PIN LU ; LIANG-CHUAN LAI ; Hsueh, Chia-Hsiang; YEN BIN LIU ; CHIA-TI TSAI ; LIAN-YU LIN ; CHIH-CHIEH YU ; JUEY-JEN HWANG ; FU-TIEN CHIANG ; Yeh, Sherri Shih-Fan; WEN-PIN CHEN ; ERIC YAO-YU CHUANG ; LING-PING LAI ; JIUNN-LEE LIN Scientific Reports
1042014Particle Beam Therapy: contemporary trends and reviewsHuang Giap; Eric Y Chuang; Gary Y Yang; ERIC YAO-YU CHUANG Particle Beam Therapy: contemporary trends and reviews
1052014Radiogenomics: Radiobiology enters the era of big data and team scienceRosenstein, B.S.; West, C.M.; Bentzen, Sø.M.; Alsner, J.; Andreassen, C.N.; Azria, D.; Barnett, G.C.; Baumann, M.; Burnet, N.; Chang-Claude, J.; ERIC YAO-YU CHUANG ; Coles, C.E.; Dekker, A.; De Ruyck, K.; De Ruysscher, D.; Drumea, K.; Dunning, A.M.; Easton, D.; Eeles, R.; Fachal, L.; Gutiérrez-Enríquez, S.; Haustermans, K.; Henríquez-Hernández, L.A.; Imai, T.; Jones, G.D.D.; Kerns, S.L.; Liao, Z.; Onel, K.; Ostrer, H.; Parliament, M.; Pharoah, P.D.P.; Rebbeck, T.R.; Talbot, C.J.; Thierens, H.; Vega, A.; Witte, J.S.; Wong, P.; Zenhausern, F.International Journal of Radiation Oncology Biology Physics8673
1062014Refinement of breast cancer risk prediction with concordant leading edge subsets from prognostic gene signaturesHuang, C.-C.; Tu, S.-H.; Lien, H.-H.; Huang, C.-S.; Huang, C.-J.; LIANG-CHUAN LAI ; Tsai, M.-H.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Breast Cancer Research and Treatment33
1072014Comparisons and performance evaluations of RNA-seq alignment toolsWang, W.-A.; Wu, C.-T.; TZU-PIN LU ; Tsai, M.-H.; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG Proceedings of 2014 International Conference on Electrical Engineering and Computer Science, ICEECS 201430
1082014Identification of gene expression biomarkers for predicting radiation exposureTZU-PIN LU ; Hsu, Yi-Yao; LIANG-CHUAN LAI ; Tsai, Mong-Hsun; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Scientific Reports3429
1092014Identification of genes with consistent methylation levels across different human tissuesTZU-PIN LU ; TZE-HSIANG CHEN ; Tsai, M.-H.; KUAN-TING KUO ; CHUHSING KATE HSIAO ; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG Scientific Reports139
1102014SLCO3A1, a novel Crohn's disease-associated gene, regulates NF-κB activity and associates with intestinal perforationSHU-CHEN WEI ; Tan, Y.-Y.; Weng, M.-T.; LIANG-CHUAN LAI ; Hsiao, J.-H.; Chuang, E.Y.; CHIA-TUNG SHUN ; Wu, D.-C.; Kao, A.-W.; Chuang, C.-S.; YEN-HSUAN NI ; MING-JIUM SHIEH ; CHIEN-CHIH TUNG ; Chen, Y.; Wang, C.-Y.; Xavier, R.J.; Podolsky, D.K.; ERIC YAO-YU CHUANG PLoS ONE1815
1112014MicroRNA-769-3p down-regulates NDRG1 and enhances apoptosis in MCF-7 cells during reoxygenationLuo, E.-C.; Chang, Y.-C.; Sher, Y.-P.; Huang, W.-Y.; Chuang, L.-L.; Chiu, Y.-C.; Tsai, M.-H.; ERIC YAO-YU CHUANG ; LIANG-CHUAN LAI Scientific Reports3331
1122014SNP rs10248565 in HDAC9 as a novel genomic aberration biomarker of lung adenocarcinoma in non-smoking womenLIANG-CHUAN LAI ; Tsai, M.-H.; Chen, P.-C.; Chen, L.H.; Hsiao, J.-H.; Chen, S.-K.; TZU-PIN LU ; JANG-MING LEE ; Hsu, C.-P.; CHUHSING KATE HSIAO ; ERIC YAO-YU CHUANG Journal of Biomedical Science1310
1132013Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme.ERIC YAO-YU CHUANG 2013 IEEE International Conference on Bioinformatics and Biomedicine 
1142013Identification of reproducible gene expression signatures in lung adenocarcinoma.ERIC YAO-YU CHUANG BMC Bioinformatics 
1152013Multiclass prediction with partial least square regression for gene expression data: applications in breast cancer intrinsic taxonomy.ERIC YAO-YU CHUANG Biomed Research International 
1162013Characterization of conditions for competing endogenous RNA regulation in GBM.ERIC YAO-YU CHUANG 2013 IEEE International Workshop on Genomic Signal Processing and Statistics 
1172013Concurrent gene signatures for han chinese breast cancers.ERIC YAO-YU CHUANG PLoS One
1182013MicroRNA-449a enhances radiosensitivity in lung adenocarcinoma cells.ERIC YAO-YU CHUANG 2013 AACR annual meeting
1192013An integrative analysis to identify putative drugs for acute myeloid leukemia.ERIC YAO-YU CHUANG 2013 AACR annual meeting 
1202013Prenatal smoke exposure, DNA methylation, and childhood atopic dermatitis.ERIC YAO-YU CHUANG Clinical & Experimental Allergy 
1212013Identification of estrogen receptor modulated gene methylation network in breast cancer.ERIC YAO-YU CHUANG 2013 AACR annual meeting 
1222013Identification of novel miRNAs in breast data of the next generation sequencing using miRDeep2 and Galaxy.ERIC YAO-YU CHUANG 2013 AACR annual meeting 
1232013MicroRNA-449a enhances radiosensitivity in CL1-0 lung adenocarcinoma cells.ERIC YAO-YU CHUANG PLoS One
1242013Identification of universal survival predictors in lung adenocarcinoma.ERIC YAO-YU CHUANG 2013 AACR annual meeting 
1252013Common applications of next-generation sequencing technologies in genomic research.ERIC YAO-YU CHUANG Translational Cancer Research 
1262013A preliminary study of concurrent gains and losses across gene expression profiles and comparative genomic hybridization in Taiwanese breast cancer patients.ERIC YAO-YU CHUANG Translational Cancer Research 
1272013Dissecting the Heterogeneity of Luminal Subtype Breast Cancer Using Gene Component Analysis.ERIC YAO-YU CHUANG Journal of Medical Research and Development(JMRD) 
1282013Gene regulation, modulation, and their applications in gene expression data analysisFlores, M.; Hsiao, T.-H.; Chiu, Y.-C.; Huang, Y.; Chen, Y.; ERIC YAO-YU CHUANG Advances in Bioinformatics240
1292013Differential genomic alterations in normal and cancerous lung cells in response to chronic inflammationWu, F.-C.; LIANG-CHUAN LAI ; Kuo, Y.-H.; Lee, Y.-H.; Hsu, F.-H.; Shen, C.-Y.; Chuang, E.Y.; ERIC YAO-YU CHUANG Translational Cancer Research11
1302013Identification of reproducible gene expression signatures in lung adenocarcinomaTZU-PIN LU ; ERIC YAO-YU CHUANG BMC bioinformatics1311
1312013Modeling competing endogenous RNA regulatory networks in glioblastoma multiformeChiu, Y.-C.; Chuang, E.Y.; Hsiao, T.-H.; Chen, Y.; ERIC YAO-YU CHUANG Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 201350
1322013A preliminary study of concurrent gains and losses across gene expression profiles and comparative genomic hybridization in Taiwanese breast cancer patientsHuang, C.-C.; Jeng, J.-Y.; Tu, S.-H.; Lien, H.-H.; Huang, C.-S.; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG Translational Cancer Research00
1332013MicroRNA-449a Enhances Radiosensitivity in CL1-0 Lung Adenocarcinoma CellsLiu, Y.-J.; Lin, Y.-F.; Chen, Y.-F.; Luo, E.-C.; Sher, Y.-P.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG ; LIANG-CHUAN LAI PLoS ONE4433
1342013Multiclass prediction with partial least square regression for gene expression data: Applications in breast cancer intrinsic taxonomyHuang, C.-C.; Tu, S.-H.; Huang, C.-S.; Lien, H.-H.; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG BioMed Research International128
1352013Concurrent analysis of copy number variation and gene expression: Application in paired non-smoking female lung cancer patientsChen, P.-C.; TZU-PIN LU ; Chang, J.-C.; LIANG-CHUAN LAI ; MONG-HSUN TSAI ; CHUHSING KATE HSIAO ; ERIC YAO-YU CHUANG International Journal of Data Mining and Bioinformatics00
1362013Common applications of next-generation sequencing technologies in genomic researchLee, C.-Y.; Chiu, Y.-C.; Wang, L.-B.; Kuo, Y.-L.; Chuang, E.Y.; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG Translational Cancer Research3424
1372013Transcription of Tnfaip3 is regulated by NF-κB and p38 via C/EBPβ in activated macrophages.Lai, Ting-Yu; Wu, S.D.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG ; Chuang, L.L.; LI-CHUNG HSU ; LIANG-CHUAN LAI PloS one26
1382013Prenatal smoke exposure, DNA methylation, and childhood atopic dermatitisWang, I.-J.; Chen, S.-L.; TZU-PIN LU ; Chuang, E.Y.; ERIC YAO-YU CHUANG Clinical and Experimental Allergy8678
1392013Concurrent Gene Signatures for Han Chinese Breast CancersHuang, C.-C.; Tu, S.-H.; Lien, H.-H.; Jeng, J.-Y.; Huang, C.-S.; Huang, C.-J.; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG PLoS ONE6054
1402012Using gene sets to identify putative drugs for breast cancerERIC YAO-YU CHUANG 2013 IEEE International Conference on Bioinformatics and Biomedicine20
1412012Combination of Genomic Technologies and Bioinformatics for Exploring New Cancer Biomarkers.ERIC YAO-YU CHUANG EITA2012-BIO 
1422012Prediction consistency and clinical presentations of breast cancer molecular subtypes for Han Chinese population.ERIC YAO-YU CHUANG Journal of Translational Medicine 
1432012The Use of Germline Polymorphisms in Predicting Concurrent Chemoradiotherapy Response in Esophageal Cancer.ERIC YAO-YU CHUANG International Journal of Radiation Oncology Biology Physics 
1442012Charged particle beam therapy: A new dawn for cancer treatmentGiap, H.; Chuang, E.Y.; ERIC YAO-YU CHUANG Translational Cancer Research21
1452012Expression and functions of semaphorins in cancerTZU-PIN LU ; Tsai, M.-H.; CHUHSING KATE HSIAO ; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG Translational Cancer Research75
1462012Translational cancer research - message from the editor-in-chiefChuang, E.Y.; ERIC YAO-YU CHUANG Translational Cancer Research33
1472012A whole genome methylation analysis of systemic lupus erythematosus: Hypomethylation of the IL10 and IL1R2 promoters is associated with disease activitySHIN-YU LIN ; SONG-CHOU HSIEH ; Lin, Y.-C.; CHIEN-NAN LEE ; MONG-HSUN TSAI ; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG ; PAU-CHUNG CHEN ; Hung, C.-C.; Chen, L.-Y.; WU-SHIUN HSIEH ; Niu, D.-M.; Su, Y.-N.; HONG-NERNG HO Genes and Immunity6658
1482012MiRSystem: An integrated system for characterizing enriched functions and pathways of microRNA targetsTZU-PIN LU ; Lee, C.-Y.; Tsai, M.-H.; Chiu, Y.-C.; CHUHSING KATE HSIAO ; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG PLoS ONE253231
1492012Use of germline polymorphisms in predicting concurrent chemoradiotherapy response in esophageal cancerChen, P.-C.; YEN-CHING CHEN ; LIANG-CHUAN LAI ; Tsai, M.-H.; Chen, S.-K.; Yang, P.-W.; Lee, Y.-C.; CHUHSING KATE HSIAO ; JANG-MING LEE ; ERIC YAO-YU CHUANG International Journal of Radiation Oncology Biology Physics119
1502011Radiogenomics: An Emerging Field for Personalized Radiation Therapy.ERIC YAO-YU CHUANG 2011 International Symposium on Radiation Medicine: The Future Research and Development of Radiation Medicine 
1512011Integrated analyses of copy number variations and gene expression in lung adenocarcinoma.ERIC YAO-YU CHUANG PLoS One 
1522011Down-Regulation of NDRG1 Promotes Migration of Cancer Cells during Reoxygenation.ERIC YAO-YU CHUANG PLoS One 
1532011DBCAT: database of CpG islands and analytical tools for identifying comprehensive methylation profiles in cancer cells.ERIC YAO-YU CHUANG Journal of Computational Biology 
1542011Semaphorin 6A inhibits the cell migration in lung adenocarcinoma cells.ERIC YAO-YU CHUANG 2011 AACR annual meeting 
1552011Infinite basis set extrapolation for double hybrid density functional theory 1: Effect of applying various extrapolation functions.Chuang, Yao-Yuan; Chen, Sheng-Min; ERIC YAO-YU CHUANG Journal of Computational Chemistry910
1562011Identification of prognostic genes for recurrent risk prediction in triple negative breast cancer patients in TaiwanChen, Lee H.; WEN-HUNG KUO ; MONG-HSUN TSAI ; Chen, Pei-Chun; CHUHSING KATE HSIAO ; ERIC YAO-YU CHUANG ; Chang, Li-Yun; FON-JOU HSIEH ; LIANG-CHUAN LAI ; KING-JEN CHANG PLoS ONE2621
1572011In vivo THz fiber-scanning mammography of early breast cancer in miceChen, H.; Chen, T.-H.; Fu, S.-C.; WEN-JENG LEE ; Tseng, T.-F.; Lu, J.-T.; Tsai, Y.-F.; Huang, Y.-Y.; Chuang, E.Y.; Hwang, Y.-J.; ERIC YAO-YU CHUANG IRMMW-THz 2011 - 36th International Conference on Infrared, Millimeter, and Terahertz Waves10
1582011Down-regulation of NDRG1 promotes migration of cancer cells during reoxygenationLIANG-CHUAN LAI ; Su, Y.-Y.; Chen, K.-C.; Tsai, M.-H.; Sher, Y.-P.; TZU-PIN LU ; Lee, C.-Y.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG PLoS ONE2624
1592011Integrated analyses of copy number variations and gene expression in lung adenocarcinomaTZU-PIN LU ; LIANG-CHUAN LAI ; Tsai, M.-H.; Chen, P.-C.; Hsu, C.-P.; JANG-MING LEE ; CHUHSING KATE HSIAO ; ERIC YAO-YU CHUANG PLoS ONE6161
1602011High-sensitivity in vivo THz transmission imaging of early human breast cancer in a subcutaneous xenograft mouse modelCHI-KUANG SUN ; ERIC YAO-YU CHUANG ; WEN-JENG LEE ; Lu J.-T.; Kuo C.-C.; Fu S.-C.; Tsai Y.-F.; YI-YOU HUANG ; Chuang E.Y.; Hwang Y.-J.Optics Express8271
1612011DBCAT: Database of CpG islands and analytical tools for identifying comprehensive methylation profiles in cancer cellsKuo, H.-C.; Lin, P.-Y.; Chung, T.-C.; Chao, C.-M.; LIANG-CHUAN LAI ; Tsai, M.-H.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Journal of Computational Biology3827
1622010Verifying expressed transcript variants by detecting and assembling stretches of consecutive exons.ERIC YAO-YU CHUANG Nucleic Acids Research
1632010Identification of a novel biomarker, SEMA5A, for non-small cell lung carcinoma in nonsmoking women.ERIC YAO-YU CHUANG Cancer Epidemiology Biomarkers & Prevention 
1642010Differential cytokine-related signaling pathways responded to ionizing radiation in two lung adenocarcinoma cell lines.ERIC YAO-YU CHUANG 2010 AACR annual meeting 
1652010Distinct Signaling Pathways After Higher or lower doses of radiation in three closely related human lymphoblast cell lines.ERIC YAO-YU CHUANG International Journal of Radiation Oncology, Biology, Physics
1662010Concurrent analysis of copy number variation and gene expression: Application in paired non-smoking female lung cancer patientsChang, J.-C.; LIANG-CHUAN LAI ; TZU-PIN LU ; MONG-HSUN TSAI ; Chuang, E.Y.; CHUHSING KATE HSIAO ; ERIC YAO-YU CHUANG Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 201000
1672010Utilizing cox regression model to assess the relations between predefined gene sets and the survival outcome of lung adenocarcinomaLu, J.-Y.; Chen, P.-C.; CHUHSING KATE HSIAO ; ERIC YAO-YU CHUANG ; MONG-HSUN TSAI ; LIANG-CHUAN LAI Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 201000
1682010Concurrent analysis of copy number variations and expression profiles to identify genes associated with tumorigenesis and survival outcome in lung adenocarcinomaTZU-PIN LU ; Chen, P.-C.; LIANG-CHUAN LAI ; Tsai, M.-H.; CHUHSING KATE HSIAO ; ERIC YAO-YU CHUANG Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 201010
1692010Comparison of triple negative breast cancer between Asian and western data setsChen, L.H.; LIANG-CHUAN LAI ; CHUHSING KATE HSIAO ; Chen, P.-C.; Tsai, M.-H.; WEN-HUNG KUO ; KING-JEN CHANG ; ERIC YAO-YU CHUANG 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 201000
1702010Projecting partial least square and principle component regression across microarray studiesHunag, C.-C.; Tu, S.-H.; Lien, H.-H.; Huang, C.-S.; ERIC YAO-YU CHUANG ; LIANG-CHUAN LAI 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 201000
1712010Verifying expressed transcript variants by detecting and assembling stretches of consecutive exonsHsiao, T.-H.; Lin, C.-H.; Lee, T.-T.; Cheng, J.-Y.; Wei, P.-K.; Chuang, E.Y.; Peck, K.; ERIC YAO-YU CHUANG Nucleic Acids Research22
1722010Identification of a novel biomarker, SEMA5A, for non-small cell lung carcinoma in nonsmoking womenTZU-PIN LU ; Tsai, M.-H.; JANG-MING LEE ; Hsu, C.-P.; Chen, P.-C.; CHUNG-WU LIN ; JIN-YUAN SHIH ; PAN-CHYR YANG ; CHUHSING KATE HSIAO ; LIANG-CHUAN LAI ; ERIC YAO-YU CHUANG Cancer Epidemiology Biomarkers and Prevention248234
1732010Distinct Signaling Pathways After Higher or Lower Doses of Radiation in Three Closely Related Human Lymphoblast Cell LinesTZU-PIN LU ; LIANG-CHUAN LAI ; Lin, B.-I.; Chen, L.-H.; Hsiao, T.-H.; Liber, H.L.; Cook, J.A.; Mitchell, J.B.; Tsai, M.-H.; ERIC YAO-YU CHUANG ; LI-HAN CHEN International Journal of Radiation Oncology Biology Physics1414
1742009Comparison of several radiation effects in human MCF10A mammary epithelial cells cultured as 2D monolayers or 3D acinar stuctures in matrigelERIC YAO-YU CHUANG Radiation Research
1752009Genomic and phenotypic analysis reveals a key role for CCN1 (CYR61) in BAG3-modulated adhesion and invasionERIC YAO-YU CHUANG The Journal of Pathology2728
1762009Comparison of several radiation effects in human MCF10A mammary epithelial cells cultured as 2D monolayers or 3D acinar stuctures in matrigelLin, Y.-F.; Nagasawa, H.; Peng, Y.; Chuang, E.Y.; Bedford, J.S.; ERIC YAO-YU CHUANG Radiation Research1921
1772009Low-dose radiation-induced senescent stromal fibroblasts render nearby breast cancer cells radioresistantTsai, K.K.C.; Stuart, J.; Chuang, Y.-Y.E.; Little, J.B.; Yuan, Z.-M.; ERIC YAO-YU CHUANG Radiation Research5749
1782008研究人類肺部長期發炎反應改變腫瘤抑制基因的現象 (新制多年期第2年)莊曜宇 
1792008乳癌治療抗療性之整合研究-乳癌經放射治療、化學治療或合併治療後分子特徵之比較(子計畫二)(1/3)莊曜宇 
1802008DNA (cytosine-5)-methyltransferase 1 as a mediator of mutant p53-determined p16ink4A down-regulationGuo Z; MONG-HSUN TSAI ; Shiao Y.-H; LI-HAN CHEN ; Wei M.-L; Lv X; Gius D; Little J.B; Mitchell J.B; ERIC YAO-YU CHUANG Journal of Biomedical Science109
1812008A probe-density-based analysis method for array CGH data: Simulation, normalization and centralizationChen, H.-I.H.; Hsu, F.-H.; Jiang, Y.; Tsai, M.-H.; PAN-CHYR YANG ; Meltzer, P.S.; Chuang, E.Y.; MONG-HSUN TSAI ; CHUANG, ERIC YAO-YU ; ERIC YAO-YU CHUANG Bioinformatics2221
1822008Erratum: A probe-density-based analysis method for array CGH data: Simulation, normalization and centralization (Bioinformatics (2008) vol. 24 (16) (1749-1756))Chen, H.-I.H.; Hsu, F.-H.; Jiang, Y.; Tsai, M.-H.; PAN-CHYR YANG ; Meltzer, P.S.; Chuang, E.Y.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Bioinformatics00
1832008DNA (cytosine-5)-methyltransferase 1 as a mediator of mutant p53-determined p16 ink4A down-regulationGuo, Zhanjun; MONG-HSUN TSAI ; Shiao, Yih-Horng; LI-HAN CHEN ; Wei, Mei-Ling; Lv, Xing; Gius, David; Little, John B.; Mitchell, James B.; ERIC YAO-YU CHUANG Journal of Biomedical Science109
1842007研究人類肺部長期發炎反應改變腫瘤抑制基因的現象 (新制多年期第1年)莊曜宇 
1852007Gene expression profiling of breast, prostate, and glioma cells following single versus fractionated doses of radiationMONG-HSUN TSAI ; Cook, John A.; ramouli, Gadisetti V.R.; DeGraff, William; Yan, Hailing; Zhao, Shuping; Coleman, C. Norman; Mitchell, James B.; ERIC YAO-YU CHUANG Cancer Research158160
1862007Calculating rate constants with updated Hessians using variational transition state theory with multidimensional tunneling.Chuang, Yao-Yuan; ERIC YAO-YU CHUANG Journal of Computational Chemistry01
1872006Microarray Gene Expression Data Analysis in Cancer Research.ERIC YAO-YU CHUANG The 28th World Congress of Internal Medicine(2006 WCIM) 
1882006Distinct effects of ionizing radiation on in vivo murine kidney and brain normal tissue gene expressionERIC YAO-YU CHUANG Clinical Cancer Research2525
1892006Development of a normalization algorithm for array comparative genomic hybridizationSingh, S.; Chen, H.-I.H.; Hsu, F.-H.; Tsai, M.-H.; Chuang, E.Y.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG 2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 200600
1902006Abnormal gene expression profiles in unaffected parents of patients with hereditary-type retinoblastomaERIC YAO-YU CHUANG ; Chen, Xi; Tsai, Mong-Hsun ; Yan, Hailing; Li, Chuan-Yuan; Mitchell, James B.; Nagasawa, Hatsumi; Wilson, Paul F.; Peng, Yuanlin; Fitzek, Markus M.; Bedford, Joel S.; Little, John B.Cancer Research1010
1912006Transcriptional responses to ionizing radiation reveal that p53R2 protects against radiation-induced mutagenesis in human lymphoblastoid cellsMONG-HSUN TSAI ; Chen, X.; Chandramouli, G. V. R.; Chen, Y.; Yan, H.; Zhao, S.; Keng, P.; Liber, H. L.; Coleman, C. N.; Mitchell, J. B.; ERIC YAO-YU CHUANG Oncogene3535
1922006Radiation-induced changes in gene-expression profiles for the SCC VII tumor cells grown in vitro and in vivoCook, John A.; Chuang, Eric Y.; Tsai, Mong-Hsun ; Coffin, Debbie; Degraff, William; Sowers, Anastasia L.; ERIC YAO-YU CHUANG Antioxidants & Redox Signaling1311
1932005c-Abl Regulates Early Growth Response (EGR1) in Response to Oxidative Stress. OncogeneERIC YAO-YU CHUANG Oncogene2828
1942005Gene expression profiles associated with response to chemotherapy in epithelial ovarian cancersERIC YAO-YU CHUANG Clinical Cancer Research158151
1952005Cellular Mechanisms for Low-Dose Radiation-Induced Perturbation of the Breast Tissue Microenvironment.ERIC YAO-YU CHUANG Cancer Research112102
1962005Evaluation of hybridization conditions for spotted oligonucleotide-based DNA microarrays.Tsai, M.H.; Yan, H.; Chen, X.; Chandramouli, G.V.R.; Zhao, S.; Coffin, D.; Coleman, C.N.; Mitchell, J.B.; Chuang, E.Y.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG Molecular Biotechnology33
1972005Effects of Hypoxia on Radiation-Responsive Stress-Activated Protein Kinase, p53, and Caspase 3 Signals in TK6 Human Lymphoblastoid CellsERIC YAO-YU CHUANG Cancer Res 
1982005Cellular Mechanisms for Low-Dose Radiation-Induced Perturbation of the Breast Tissue MicroenvironmentTsai, Kelvin K.C.; Chuang, Eric Yao-Yu ; Little, John B.; Yuan, Zhi-MinCancer Research 
1992004Correction Log Ratios for Signal Saturation in cDNA MicroarraysERIC YAO-YU CHUANG Bioinformatics2523
2002004Distinct Effects on Gene Expression of Chemical and Genetic Manipulation of the Cancer Epigenome Revealed by a Multimodality ApproachERIC YAO-YU CHUANG Cancer Cell163160
2012004Fludarabine treatment of patients with chronic lymphocytic leukemia induces a p53-dependent gene expression responseERIC YAO-YU CHUANG Blood127112
2022004Nuclear factor-kB is an Important Modulator of the Altered Gene Expression Profile and Malignant Phenotype in Squamous Cell CarcinomaERIC YAO-YU CHUANG Cancer Research145142
2032004Transcriptional Signature of Flavopiridol-induced Tumor Cell DeathERIC YAO-YU CHUANG Molecular Cancer Therapeutics
2042004Comparative Genomics of Rickettsia prowazekii Madrid E and Breinl StrainsGe, H.; ERIC YAO-YU CHUANG ; Zhao, S.; Tong M; MONG-HSUN TSAI ; Temenak J.J; Richards A.L; Ching W.-M.; ERIC YAO-YU CHUANGJournal of Bacteriology3026
2052004Erratum: Nuclear factor-κB is an important modulator of the altered gene expression profile and malignant phenotype in squamous cell carcinoma (Cancer Research (September 2004) 64 (6511-6523)Loercher, A.; Lee, T.L.; Ricker, J.L.; Howard, A.; Geoghegen, J.; Chen, Z.; Sunwoo, J.B.; Sitcheran, R.; Mitchell, J.B.; Baldwin Jr.; A.S.; Van Waes, C.; ERIC YAO-YU CHUANG Cancer Research156142
2062004Dissection of the Kaposi's sarcoma-associated herpesvirus gene expression program by using the viral DNA replication inhibitor cidofovirLu, M.; Suen, J.; Frias, C.; Pfeiffer, R.; MONG-HSUN TSAI ; ERIC YAO-YU CHUANG ; Zeichner, S.L.Journal of Virology6455
2072004Microarray analysis in clinical oncology: Pre-clinical optimization using needle core biopsies from xenograft tumorsGoley, E.M.; Anderson, S.J.; Ménard, C.; Lü, X.; Tofilon, P.J.; Camphausen, K.; ERIC YAO-YU CHUANG BMC Cancer1314
2082003Gene Expression Analysis of Esophageal Squamous Cell Carcinoma Reveals Consistent Molecular Profiles Related to a Family History of Upper Gastrointestinal CancerERIC YAO-YU CHUANG Cancer Research
2092003Genomic Studies of Rickettsia Prowazekii Virulent vs. Avirulent StrainsERIC YAO-YU CHUANG Annals of the New York Academy of Sciences
2102003Genomic studies of Rickettsia prowazekii virulent and avirulent strainsGe, H.; Chuang, Y.-Y.E.; Zhao, S.; Temenak, J.J.; Ching, W.-M.; ERIC YAO-YU CHUANG Annals of the New York Academy of Sciences56
2112003Semiquinone radical intermediate in catecholic estrogen-mediated cytotoxicity and mutagenesis: Chemoprevention strategies with antioxidantsSamuni A.M; ERIC YAO-YU CHUANG ; Krishna M.C; Stein W; DeGraff W; Russo A; Mitchell J.B.Proceedings of the National Academy of Sciences of the United States of America6255
2122002Gene Expression After Treatment with Hydrogen Peroxide, Menadione, or t-Butyl Hydroperoxide in Breast Cancer CellsERIC YAO-YU CHUANG Cancer Research
2131999Radiation-induced mutations at the autosomal thymidine kinase locus are not elevated in p53-null cellsERIC YAO-YU CHUANG Cancer Research
2141998The construction of a p53-null cell line from human lymphoblast cells for mutagenesis studiesERIC YAO-YU CHUANG Mol. Mutagen 
2151997Mutational spectra at the thymidine kinase locus of spontaneously-arising and mitomycin C (MMC)-induced mutants in two closely related human lymphoblast cell linesERIC YAO-YU CHUANG Mol. Mutagen 
2161996Effects of cell cycle position on ionizing radiation mutagenesis. I. Quantitative assays of two genetic loci in a human lymphoblastoid cell lineERIC YAO-YU CHUANG Radiation Research75
2171996A DNA cross-linking agent (MMC) induces systematic differences in toxicity and mutagenicity in two closely related human lymphoblast cell lines.ERIC YAO-YU CHUANG Environmental and Molecular Mutagenesis
2181992Selection and characterization of alpha-amylase-overproducing recombinant Escherichia coli containing the bacterial hemoglobin geneERIC YAO-YU CHUANG Applied Microbiology and Biotechnology120