公開日期 | 標題 | 作者 | 來源出版物 | scopus | WOS | 全文 |
2014 | Ancient hybridizations among the ancestral genomes of bread wheat | Marcussen, Thomas; Sandve, Simen R.; Heier, Lise; Spannagl, Manuel; Pfeifer, Matthias; Jakobsen, Kjetill S.; Wulff, Brande B.H.; Steuernagel, Burkhard; Mayer, Klaus F.X.; Olsen, Odd Arne; Rogers, Jane; Doležel, Jaroslav; Pozniak, Curtis; Eversole, Kellye; Feuillet, Catherine; Gill, Bikram; Friebe, Bernd; Lukaszewski, Adam J.; Sourdille, Pierre; Endo, Takashi R.; Kubaláková, Marie; Šíhalíková, Jarmila; Dubská, Zdeňka; Vrána, Jan; Šperková, Romana; Šimková, Hana; Febrer, Melanie; Clissold, Leah; McLay, Kirsten; Singh, Kuldeep; Chhuneja, Parveen; Singh, Nagendra K.; Khurana, Jitendra; Akhunov, Eduard; Choulet, Frédéric; Alberti, Adriana; Barbe, Valérie; Wincker, Patrick; Kanamori, Hiroyuki; Kobayashi, Fuminori; TAKESHI ITOH ; Matsumoto, Takashi; Sakai, Hiroaki; Tanaka, Tsuyoshi; Wu, Jianzhong; Ogihara, Yasunari; Handa, Hirokazu; Maclachlan, P. Ron; Sharpe, Andrew; Klassen, Darrin; Edwards, David; Batley, Jacqueline; Lien, Sigbjørn; Caccamo, Mario; Ayling, Sarah; Ramirez-Gonzalez, Ricardo H.; Clavijo, Bernardo J.; Wright, Jonathan; Martis, Mihaela M.; Mascher, Martin; Chapman, Jarrod; Poland, Jesse A.; Scholz, Uwe; Barry, Kerrie; Waugh, Robbie; Rokhsar, Daniel S.; Muehlbauer, Gary J.; Stein, Nils; Gundlach, Heidrun; Zytnicki, Matthias; Jamilloux, Véronique; Quesneville, Hadi; Wicker, Thomas; Faccioli, Primetta; Colaiacovo, Moreno; Stanca, Antonio Michele; Budak, Hikmet; Cattivelli, Luigi; Glover, Natasha; Pingault, Lise; Paux, Etienne; Sharma, Sapna; Appels, Rudi; Bellgard, Matthew; Chapman, Brett; Nussbaumer, Thomas; Bader, Kai Christian; Rimbert, Hélène; Wang, Shichen; Knox, Ron; Kilian, Andrzej; Alaux, Michael; Alfama, Françoise; Couderc, Loïc; Guilhot, Nicolas; Viseux, Claire; Loaec, Mikaël; Keller, Beat; Praud, Sebastien | Science | 496 | | |
2011 | Asymmetric distribution of gene expression in the centromeric region of rice chromosome 5 | Mizuno, Hiroshi; Kawahara, Yoshihiro; Wu, Jianzhong; Katayose, Yuichi; Kanamori, Hiroyuki; Ikawa, Hiroshi; TAKESHI ITOH ; Sasaki, Takuji; Matsumoto, Takashi | Frontiers in Plant Science | 14 | | |
2013 | Bex-db: Bioinformatics workbench for comprehensive analysis of barley-expressed genes | Tanaka, Tsuyoshi; Sakai, Hiroaki; Fujii, Nobuyuki; Kobayashi, Fuminori; Nakamura, Shingo; TAKESHI ITOH ; Matsumoto, Takashi; Wu, Jianzhong | Breeding Science | 5 | | |
2013 | Characterisation of the wheat (triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: Gene expression in Pi-stressed wheat | Oono, Youko; Kobayashi, Fuminori; Kawahara, Yoshihiro; Yazawa, Takayuki; Handa, Hirokazu; TAKESHI ITOH ; Matsumoto, Takashi | BMC Genomics | 94 | | |
2014 | A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome | Lukaszewski, Adam J.; Alberti, Adriana; Sharpe, Andrew; Kilian, Andrzej; Stanca, Antonio Michele; Keller, Beat; Clavijo, Bernardo J.; Friebe, Bernd; Gill, Bikram; Wulff, Brande; Chapman, Brett; Steuernagel, Burkhard; Feuillet, Catherine; Viseux, Claire; Pozniak, Curtis; Rokhsar, Daniel S.; Klassen, Darrin; Edwards, David; Akhunov, Eduard; Paux, Etienne; Alfama, Françoise; Choulet, Frédéric; Kobayashi, Fuminori; Muehlbauer, Gary J.; Quesneville, Hadi; Šimková, Hana; Rimbert, Hélène; Gundlach, Heidrun; Budak, Hikmet; Sakai, Hiroaki; Handa, Hirokazu; Kanamori, Hiroyuki; Batley, Jacqueline; Vrána, Jan; Rogers, Jane; Číhalíková, Jarmila; Doležel, Jaroslav; Chapman, Jarrod; Poland, Jesse A.; Wu, Jianzhong; Khurana, Jitendra; Wright, Jonathan; Bader, Kai Christian; Eversole, Kellye; Barry, Kerrie; McLay, Kirsten; Mayer, Klaus F.X.; Singh, Kuldeep; Clissold, Leah; Pingault, Lise; Couderc, Loïc; Cattivelli, Luigi; Spannagl, Manuel; Kubaláková, Marie; Caccamo, Mario; Mascher, Martin; Bellgard, Matthew; Pfeifer, Matthias; Zytnicki, Matthias; Febrer, Melanie; Alaux, Michael; Martis, Mihaela M.; Loaec, Mikaël; Colaiacovo, Moreno; Singh, Nagendra K.; Glover, Natasha; Guilhot, Nicolas; Stein, Nils; Olsen, Odd Arne; Maclachlan, P. Ron; Chhuneja, Parveen; Wincker, Patrick; Sourdille, Pierre; Faccioli, Primetta; Ramirez-Gonzalez, Ricardo H.; Waugh, Robbie; Šperková, Romana; Knox, Ron; Appels, Rudi; Sharma, Sapna; Ayling, Sarah; Praud, Sebastien; Wang, Shichen; Lien, Sigbjørn; Sandve, Simen Rød; Matsumoto, Takashi; Endo, Takashi R.; TAKESHI ITOH ; Nussbaumer, Thomas; Wicker, Thomas; Tanaka, Tsuyoshi; Scholz, Uwe; Barbe, Valérie; Jamilloux, Véronique; Ogihara, Yasunari; Dubská, Zdeňka | Science | 1275 | | |
2011 | Distinct evolutionary patterns of Oryza glaberrima deciphered by genome sequencing and comparative analysis | Sakai, Hiroaki; Ikawa, Hiroshi; Tanaka, Tsuyoshi; Numa, Hisataka; Minami, Hiroshi; Fujisawa, Masaki; Shibata, Michie; Kurita, Kanako; Kikuta, Ari; Hamada, Masao; Kanamori, Hiroyuki; Namiki, Nobukazu; Wu, Jianzhong; TAKESHI ITOH ; Matsumoto, Takashi; Sasaki, Takuji | Plant Journal | 25 | | |
2013 | Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles | Oono, Youko; Kawahara, Yoshihiro; Yazawa, Takayuki; Kanamori, Hiroyuki; Kuramata, Masato; Yamagata, Harumi; Hosokawa, Satomi; Minami, Hiroshi; Ishikawa, Satoru; Wu, Jianzhong; Antonio, Baltazar; Handa, Hirokazu; TAKESHI ITOH ; Matsumoto, Takashi | Plant Molecular Biology | 43 | | |
2014 | Genome interplay in the grain transcriptome of hexaploid bread wheat | Pfeifer, Matthias; Kugler, Karl G.; Sandve, Simen R.; Zhan, Bujie; Rudi, Heidi; Hvidsten, Torgeir R.; Mayer, Klaus F.X.; Olsen, Odd Arne; Rogers, Jane; Doležel, Jaroslav; Pozniak, Curtis; Eversole, Kellye; Feuillet, Catherine; Gill, Bikram; Friebe, Bernd; Lukaszewski, Adam J.; Sourdille, Pierre; Endo, Takashi R.; Kubaláková, Marie; Číhalíková, Jarmila; Dubská, Zdeňka; Vrána, Jan; Šperková, Romana; Šimková, Hana; Febrer, Melanie; Clissold, Leah; McLay, Kirsten; Singh, Kuldeep; Chhuneja, Parveen; Singh, Nagendra K.; Khurana, Jitendra; Akhunov, Eduard; Choulet, Frédéric; Alberti, Adriana; Barbe, Valérie; Wincker, Patrick; Kanamori, Hiroyuki; Kobayashi, Fuminori; TAKESHI ITOH ; Matsumoto, Takashi; Sakai, Hiroaki; Tanaka, Tsuyoshi; Wu, Jianzhong; Ogihara, Yasunari; Handa, Hirokazu; Maclachlan, P. Ron; Sharpe, Andrew; Klassen, Darrin; Edwards, David; Batley, Jacqueline; Lien, Sigbjørn; Steuernagel, Burkhard; Wulff, Brande; Caccamo, Mario; Ayling, Sarah; Ramirez-Gonzalez, Ricardo H.; Clavijo, Bernardo J.; Wright, Jonathan; Spannagl, Manuel; Martis, Mihaela M.; Mascher, Martin; Chapman, Jarrod; Poland, Jesse A.; Scholz, Uwe; Barry, Kerrie; Waugh, Robbie; Rokhsar, Daniel S.; Muehlbauer, Gary J.; Stein, Nils; Gundlach, Heidrun; Zytnicki, Matthias; Jamilloux, Véronique; Quesneville, Hadi; Wicker, Thomas; Faccioli, Primetta; Colaiacovo, Moreno; Stanca, Antonio Michele; Budak, Hikmet; Cattivelli, Luigi; Glover, Natasha; Pingault, Lise; Paux, Etienne; Sharma, Sapna; Appels, Rudi; Bellgard, Matthew; Chapman, Brett; Nussbaumer, Thomas; Bader, Kai Christian; Rimbert, Hélène; Wang, Shichen; Knox, Ron; Kilian, Andrzej; Alaux, Michael; Alfama, Françoise; Couderc, Loïc; Guilhot, Nicolas; Viseux, Claire; Loaec, Mikaël; Keller, Beat | Science | 253 | | |
2014 | Genome-wide transcriptome analysis reveals that cadmium stress signaling controls the expression of genes in drought stress signal pathways in rice | Oono, Youko; Yazawa, Takayuki; Kawahara, Yoshihiro; Kanamori, Hiroyuki; Kobayashi, Fuminori; Sasaki, Harumi; Mori, Satomi; Wu, Jianzhong; Handa, Hirokazu; TAKESHI ITOH ; Matsumoto, Takashi | PLoS ONE | 96 | | |
2016 | Genomic dissection of a ‘Fuji’ apple cultivar: Re-sequencing, SNP marker development, definition of haplotypes, and QTL detection | Kunihisa, Miyuki; Moriya, Shigeki; Abe, Kazuyuki; Okada, Kazuma; Haji, Takashi; Hayashi, Takeshi; Kawahara, Yoshihiro; Itoh, Ryutaro; TAKESHI ITOH ; Katayose, Yuichi; Kanamori, Hiroyuki; Matsumoto, Toshimi; Mori, Satomi; Sasaki, Harumi; Matsumoto, Takashi; Nishitani, Chikako; Terakami, Shingo; Yamamoto, Toshiya | Breeding Science | 23 | | |
2012 | Global transcriptome analysis reveals distinct expression among duplicated genes during sorghum-interaction | Mizuno, Hiroshi; Kawahigashi, Hiroyuki; Kawahara, Yoshihiro; Kanamori, Hiroyuki; Ogata, Jun; Minami, Hiroshi; TAKESHI ITOH ; Matsumoto, Takashi | BMC Plant Biology | 43 | | |
2013 | Improvement of the oryza sativa nipponbare reference genome using next generation sequence and optical map data | Kawahara, Yoshihiro; de la Bastide, Melissa; Hamilton, John P.; Kanamori, Hiroyuki; Mccombie, W. Richard; Ouyang, Shu; Schwartz, David C.; Tanaka, Tsuyoshi; Wu, Jianzhong; Zhou, Shiguo; Childs, Kevin L.; Davidson, Rebecca M.; Lin, Haining; Quesada-Ocampo, Lina; Vaillancourt, Brieanne; Sakai, Hiroaki; Lee, Sung Shin; Kim, Jungsok; Numa, Hisataka; TAKESHI ITOH ; Buell, C. Robin; Matsumoto, Takashi | Rice | 1199 | | |
2012 | Independent domestication of asian rice followed by gene flow from japonica to indica | Yang, Ching Chia; Yoshihiro Kawahara; Mizuno, Hiroshi; Wu, Jianzhong; Matsumoto, Takashi; TAKESHI ITOH | Molecular Biology and Evolution | 48 | | |
2014 | Next-generation survey sequencing and the molecular organization of wheat chromosome 6B | Tanaka, Tsuyoshi; Kobayashi, Fuminori; Joshi, Giri Prasad; Onuki, Ritsuko; Sakai, Hiroaki; Kanamori, Hiroyuki; Wu, Jianzhong; Šimková, Hana; Nasuda, Shuhei; Endo, Takashi R.; Hayakawa, Katsuyuki; Doležel, Jaroslav; Ogihara, Yasunari; TAKESHI ITOH ; Matsumoto, Takashi; Handa, Hirokazu | DNA Research | 36 | | |
2016 | The Nipponbare genome and the next-generation of rice genomics research in Japan | Matsumoto, Takashi; Wu, Jianzhong; TAKESHI ITOH ; Numa, Hisataka; Antonio, Baltazar; Sasaki, Takuji | Rice | 26 | | |
2014 | A novel rice cytochrome P450 gene, CYP72A31, confers tolerance to acetolactate synthase-inhibiting herbicides in rice and arabidopsis | Saika, Hiroaki; Horita, Junko; Taguchi-Shiobara, Fumio; Nonaka, Satoko; Nishizawa-Yokoi, Ayako; Iwakami, Satoshi; Hori, Kiyosumi; Matsumoto, Takashi; Tanaka, Tsuyoshi; TAKESHI ITOH ; Yano, Masahiro; Kaku, Koichiro; Shimizu, Tsutomu; Toki, Seiichi | Plant Physiology | 101 | | |
2013 | A reference rice genome sequence in the 10K Genome Era | TAKESHI ITOH ; Antonio, Baltazar A.; Kawahara, Yoshihiro; Tanaka, Tsuyoshi; Sakai, Hiroaki; Matsumoto, Takashi; Sasaki, Takuji | Genetics and Genomics of Rice | | | |
2011 | Retrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes | Sakai, Hiroaki; Mizuno, Hiroshi; Kawahara, Yoshihiro; Wakimoto, Hironobu; Ikawa, Hiroshi; Kawahigashi, Hiroyuki; Kanamori, Hiroyuki; Matsumoto, Takashi; TAKESHI ITOH ; Gaut, Brandon S. | Genome Biology and Evolution | 45 | | |
2013 | Rice annotation project database (RAP-DB): An integrative and interactive database for rice genomics | Sakai, Hiroaki; Lee, Sung Shin; Tanaka, Tsuyoshi; Numa, Hisataka; Kim, Jungsok; Kawahara, Yoshihiro; Wakimoto, Hironobu; Yang, Ching Chia; Iwamoto, Masao; Abe, Takashi; Yamada, Yuko; Muto, Akira; Inokuchi, Hachiro; Ikemura, Toshimichi; Matsumoto, Takashi; Sasaki, Takuji; TAKESHI ITOH | Plant and Cell Physiology | 524 | | |
2012 | Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction | Kawahara, Yoshihiro; Oono, Youko; Kanamori, Hiroyuki; Matsumoto, Takashi; TAKESHI ITOH ; Minami, Eiichi | PloS one | 215 | | |