研究成果

第 1 到 46 筆結果，共 46 筆。

公開日期標題作者來源出版物scopusWOS全文
12023Leveraging genomics and phenomics to accelerate improvement in mungbean: A case study in how to go from GWAS to selectionFumia, Nathan; Nair, Ramakrishnan; Lin, Ya Ping; CHENG-RUEI LEE ; Chen, Hung Wei; von Wettberg, Eric Bishop; Kantar, Michael; Schafleitner, RolandPlant Phenome Journal
22023The Past Contribution and Future Fate of Genetic Variants under Climate Change in an Island Population of Musa itineransLin, Ya-Ping; Lu, Cheng-Yueh; CHENG-RUEI LEE The American naturalist30
32023Transcriptome-wide association study coupled with eQTL analysis reveals the genetic connection between gene expression and flowering time in ArabidopsisChien, Pei-Shan; Chen, Pin-Hua; CHENG-RUEI LEE ; Chiou, Tzyy-JenJournal of experimental botany00
42023Demographic history and distinct selection signatures of two domestication genes in mungbeanLin, Ya-Ping; Chen, Hung-Wei; Yeh, Pei-Min; Anand, Shashi S; Lin, Jiunn; Li, Juan; Noble, Thomas; Nair, Ramakrishnan; Schafleitner, Roland; Samsononova, Maria; Bishop-von-Wettberg, Eric; Nuzhdin, Sergey; CHAU-TI TING ; Lawn, Robert J; CHENG-RUEI LEE Plant physiology30
52023Environment as a limiting factor of the historical global spread of mungbeanOng, Pei-Wen; Lin, Ya-Ping; Chen, Hung-Wei; Lo, Cheng-Yu; Burlyaeva, Marina; Noble, Thomas; Nair, Ramakrishnan Madhavan; Schafleitner, Roland; Vishnyakova, Margarita; Bishop-von-Wettberg, Eric; Samsonova, Maria; Nuzhdin, Sergey; CHAU-TI TING ; CHENG-RUEI LEE eLife40
62023The role of gene presence-absence variations on genetic incompatibility in Asian riceLi, Juan; CHENG-RUEI LEE The New phytologist00
72023Inducible chemical defenses in wild mungbean confer resistance to Spodoptera litura and possibly at the expense of drought toleranceChen, YJ; Cheah, BH; Lin, CY; Ku, YT; Kuo, CH; Zhang, YY; Chen, BR; Nean, O; Hsieh, CH; Yeh, PM; Yeo, FKS; Lin, YP; Chuang, WP; CHENG-RUEI LEE ; HIENG MING TING ENVIRONMENTAL AND EXPERIMENTAL BOTANY00
82021Modeling of flowering time in vigna radiata with approximate bayesian computationAgeev, Andrey; CHENG-RUEI LEE ; CHAU-TI TING ; Schafleitner, Roland; Bishop-Von Wettberg, Eric; Nuzhdin, Sergey V.; Samsonova, Maria; Kozlov, KonstantinAgronomy23
92021The ecological, genetic, and genomic architecture of local adaptation and population differentiation in Boechera strictaY-P Lin; T Mitchell-Olds; C-R Lee Proceedings of the Royal Society B66
102021Ecological factors influence balancing selection on leaf chemical profiles of a wildflowerCarley L.N; CHENG-RUEI LEE et al. Nature Ecology and Evolution910
112020Long-read bitter gourd (Momordica charantia) genome and the genomic architecture of nonclassic domesticationMatsumura, H.; Hsiao, M.-C.; Lin, Y.-P.; Toyoda, A.; Taniai, N.; Tarora, K.; Urasaki, N.; Anand, S.S.; Dhillon, N.P.S.; Schafleitner, R.; Lee, C.-R.; Lee, C.-R.; CHENG-RUEI LEE Proceedings of the National Academy of Sciences of the United States of America4035
122020Genome-wide association study in accessions of the mini-core collection of mungbean (Vigna radiata) from the World Vegetable Gene Bank (Taiwan)Sokolkova, Alena; Burlyaeva, Marina; Valiannikova, Tatjana; Vishnyakova, Margarita; Schafleitner, Roland; Lee, Cheng-Ruei ; Ting, Chau-Ti ; Nair, Ramakrishnan Madhavan; Nuzhdin, Sergey; Samsonova, Maria; von Wettberg, EricBMC Plant Biology3421
132020The climatic association of population divergence and future extinction risk of Solanum pimpinellifoliumLin, Ya-Ping; Lu, Cheng-Yueh; Lee, Cheng-Ruei; CHENG-RUEI LEE AOB PLANTS8
142020Meticulous investigation, not sequencing effort, leads to robust conclusionMatsumura, H.; Hsiao, M.-C.; Lin, Y.-P.; Toyoda, A.; Taniai, N.; Tarora, K.; Urasaki, N.; Anand, S.S.; Dhillon, N.P.S.; Schafleitner, R.; CHENG-RUEI LEE Proceedings of the National Academy of Sciences of the United States of America00
152020Dynamical climatic model for time to flowering in Vigna radiataKozlov, K.; Sokolkova, A.; Lee, C.-R.; Ting, C.-T.; Schafleitner, R.; Bishop-von Wettberg, E.; Nuzhdin, S.; CHENG-RUEI LEE ; CHAU-TI TING BMC Plant Biology178
162019Quantitative trait locus analysis of leaf morphology indicates conserved shape loci in grapevineEM Demmings; B Williams; C-R Lee ; PB Burgos; S Yang; C-F Hwang; BI Reisch; DH Chitwood; JP LondFrontiers in Plant Science1312
172019On the postglacial spread of human commensal Arabidopsis thaliana: journey to the EastHsu C.-W.; Lo C.-Y.; CHENG-RUEI LEE ; C-R Lee New Phytologist119
182019Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera strictaWang B.; Mojica J.P.; Perera N.; Lee C.-R.; Lovell J.T.; Sharma A.; Adam C.; Lipzen A.; Barry K.; Rokhsar D.S.; Schmutz J.; Mitchell-Olds T.; CHENG-RUEI LEE Genome Biology3027
192019Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta (Genome Biol (2019) 20:126 DOI: 10.1186/s13059-019-1729-9)Wang B.; Mojica J.P.; Perera N.; Lee C.-R.; Lovell J.T.; Sharma A.; Adam C.; Lipzen A.; Barry K.; Rokhsar D.S.; Schmutz J.; Mitchell-Olds T.; CHENG-RUEI LEE Genome Biology11
202019Collections of Mungbean [Vigna radiata) (L.) R. Wilczek] and urdbean [V. mungo (L.) Hepper] in Vavilov Institute (VIR): traits diversity and trends in the breeding process over the last 100 yearsBurlyaeva M.; Vishnyakova M.; Gurkina M.; Kozlov K.; CHENG-RUEI LEE ; CHAU-TI TING ; Schafleitner R.; Nuzhdin S.; Samsonova M.; von Wettberg, EricGenetic Resources and Crop Evolution116
212018Ecological causes and consequences of flower color polymorphism in a self-pollinating plant (Boechera stricta)Vaidya P.; McDurmon A.; Mattoon E.; Keefe M.; Carley L.; Lee C.-R.; Bingham R.; Anderson J.T.; CHENG-RUEI LEE New Phytologist3733
222018The functional change and deletion of FLC homologs contribute to the evolution of rapid flowering in boechera strictaLee C.-R.; Hsieh J.-W.; Schranz M.E.; Mitchell-Olds T.; CHENG-RUEI LEE Frontiers in Plant Science148
232017Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zoneLee, Cheng-Ruei; Wang, Baosheng; Mojica, Julius P.; Mandáková, Terezie; Prasad, Kasavajhala V. S. K.; Luis Goicoechea, Jose; Perera, Nadeesha; Hellsten, Uffe; Hundley, Hope N.; Johnson, Jenifer; Grimwood, Jane; Barry, Kerrie; Fairclough, Stephen; Jenkins, Jerry W.; Yu, Yeisoo; Kudrna, Dave; Zhang, Jianwei; Talag, Jayson; Golser, Wolfgang; Ghattas, Kathryn; Schranz, M. Eric; Wing, Rod; Lysak, Martin A.; Schmutz, Jeremy; Rokhsar, Daniel S.; Mitchell-Olds, Thomas; CHENG-RUEI LEE Nature Ecology & Evolution10
242017On the post-glacial spread of human commensal Arabidopsis thalianaLee C.-R.; Svardal H.; Farlow A.; Exposito-Alonso M.; Ding W.; Novikova P.; Alonso-Blanco C.; Weigel D.; Nordborg M.; CHENG-RUEI LEE Nature Communications5346
252017Young inversion with multiple linked QTLs under selection in a hybrid zoneLee C.-R.; Wang B.; Mojica J.P.; Mandáková T.; Prasad K.V.S.K.; Goicoechea J.L.; Perera N.; Hellsten U.; Hundley H.N.; Johnson J.; Grimwood J.; Barry K.; Fairclough T.; Jenkins J.W.; Yu Y.; Kudrna D.; Zhang J.; Talag J.; Golser W.; Ghattas K.; Schranz M.E.; Wing R.; Lysak M.A.; Schmutz J.; Rokhsar D.S.; Mitchell-Olds T.; CHENG-RUEI LEE Nature Ecology and Evolution7573
2620161,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thalianaThe 1001 Genomes Consortium; CHENG-RUEI LEE Cell716645
272016Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thalianaP Fransz; G Linc; C-R Lee The Plant Journal5960
282016Epigenomic Diversity in a Global Collection of Arabidopsis thaliana AccessionsKawakatsu, Taiji; Huang, Shao-Shan Carol; Jupe, Florian; Sasaki, Eriko; Schmitz, Robert J; Urich, Mark A; Castanon, Rosa; Nery, Joseph R; Barragan, Cesar; He, Yupeng; Chen, Huaming; Dubin, Manu; CHENG-RUEI LEE ; Wang, Congmao; Bemm, Felix; Becker, Claude; O'Neil, Ryan; O'Malley, Ronan C; Quarless, Danjuma X; Schork, Nicholas J; Weigel, Detlef; Nordborg, Magnus; Ecker, Joseph RCell427
292016QTL Mapping in Three Rice Populations Uncovers Major Genomic Regions Associated with African Rice Gall Midge ResistanceN Yao; C-R Lee ; K Semagn; M Sow; F Nwilene; O Kolade; R Bocco; O Oyetunji; T Mitchell-Olds; MN NdjiondjopPLoS One1612
302016Environmental versus geographical effects on genomic variation in wild soybean (Glycine soja) across its native range in northeast AsiaLeamy L.J.; Lee C-R.; Song Q.; Mujacic I.; Luo Y.; Chen C.Y.; Li C.; Kjemtrup S.; Song B.-H.; CHENG-RUEI LEE Ecology and Evolution2322
312015Understanding rice adaptation to varying agro-ecosystems: trait interactions and quantitative trait lociS Dixit; A Grondin; C-R Lee ; A Henry; T Mitchell-Olds; A KumarBMC Genomic Data3835
322014Unifying genetic canalization, genetic constraint, and genotype-by-environment interaction: QTL by genomic background by environment interaction of flowering time in Boechera strictaC-R Lee ; JT Anderson; T Mitchell-OldsPLoS Genetics1917
332014Strong selection genome-wide enhances fitness trade-offs across environments and episodes of selectionJT Anderson; C-R Lee ; T Mitchell-OldsEvolution6158
342014Large-scale adaptive divergence in Boechera fecunda, an endangered wild relative of ArabidopsisLJ Leamy; C-R Lee ; V Cousins; I Mujacic; AJ Manzaneda; K Prasad; T Mitchell-Olds; B-H SongEcology and Evolution1010
352014Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred linesGordon, Sean P.; Priest, Henry; Des Marais, David L.; Schackwitz, Wendy; Figueroa, Melania; Martin, Joel; Bragg, Jennifer N.; Tyler, Ludmila; CHENG-RUEI LEE ; Bryant, Doug; Wang, Wenqin; Messing, Joachim; Manzaneda, Antonio J.; Barry, Kerrie; Garvin, David F.; Budak, Hikmet; Tuna, Metin; Mitchell-Olds, Thomas; Pfender, William F.; Juenger, Thomas E.; Mockler, Todd C.; Vogel, John P.Plant Journal5050
362013Evolution of flux control in the glucosinolate pathway in Arabidopsis thalianaC Olson-Manning; C-R Lee ; MD Rausher; T Mitchell-OldsMolecular Biology and Evolution4744
372013Complex trait divergence contributes to environmental niche differentiation in ecological speciation of Boechera strictaC-R Lee ; T Mitchell-OldsMolecular Ecology4240
3820133D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architectureTopp, Christopher N.; Iyer-Pascuzzi, Anjali S.; Anderson, Jill T.; CHENG-RUEI LEE ; Zurek, Paul R.; Symonova, Olga; Zheng, Ying; Bucksch, Alexander; Mileyko, Yuriy; Galkovskyi, Taras; Moore, Brad T.; Harer, John; Edelsbrunner, Herbert; Mitchell-Olds, Thomas; Weitz, Joshua S.; Benfey, Philip N.Proceedings of the National Academy of Sciences of the United States of America216129
392013Genetic trade-offs and conditional neutrality contribute to local adaptation.CHENG-RUEI LEE Molecular Ecology171174
402012Environmental adaptation contributes to gene polymorphism across the Arabidopsis thaliana genomeC-R Lee ; T Mitchell-OldsMolecular Biology and Evolution2926
412012A gain-of-function polymorphism controlling complex traits and fitness in naturePrasad, Kasavajhala V. S. K.; Song, Bao-Hua; Olson-Manning, Carrie; Anderson, Jill T.; CHENG-RUEI LEE ; Schranz, M. Eric; Windsor, Aaron J.; Clauss, Maria J.; Manzaneda, Antonio J.; Naqvi, Ibtehaj; Reichelt, Michael; Gershenzon, Jonathan; Rupasinghe, Sanjeewa G.; Schuler, Mary A.; Mitchell-Olds, ThomasScience132129
422012Origin, fate, and architecture of ecologically relevant genetic variationRI Colautti; C-R Lee ; T Mitchell-OldsCurrent Opinion in Plant Biology2625
432011Quantifying effects of environmental and geographical factors on patterns of genetic differentiationC-R Lee ; T Mitchell-OldsMolecular Ecology149151
442011Boechera, a model system for ecological genomicsCA Rushworth; B-H Song; C-R Lee ; T Mitchell-OldsMolecular Ecology7775
452011Life-history QTLS and natural selection on flowering time in Boechera stricta, a perennial relative of Arabidopsis.JILL T. ANDERSON; CHENG-RUEI LEE ; THOMAS MITCHELL‐OLDSEvolution9390
462009Molecular Evolution and Functional Diversification of Fatty Acid Desaturases after Recurrent Gene Duplication in DrosophilaS. Fang; C. T. Ting ; C. R. Lee; K. H. Chu; C. C. Wang; SHUN-CHERN TSAUR ; Chau-Ti Ting ; CHENG-RUEI LEE Molecular Biology and Evolution4746