研究成果

第 1 到 43 筆結果，共 43 筆。

公開日期標題作者來源出版物scopusWOS全文
12021Development of an SSR marker-based genetic linkage map and identification of a QTL associated with flowering time in eustomaKawakatsu, Kyoko; Yagi, Masafumi; Harada, Taro; Yamaguchi, Hiroyasu; TAKESHI ITOH ; Kumagai, Masahiko; Itoh, Ryutaro; Numa, Hisataka; Katayose, Yuichi; Kanamori, Hiroyuki; Kurita, Kanako; Fukuta, NaokoBreeding Science
22020Simultaneous induction of mutant alleles of two allergenic genes in soybean by using site-directed mutagenesisSugano, Shota; Hirose, Aya; Kanazashi, Yuhei; Adachi, Kohei; Hibara, Miki; TAKESHI ITOH ; Mikami, Masafumi; Endo, Masaki; Hirose, Sakiko; Maruyama, Nobuyuki; Abe, Jun; Yamada, TetsuyaBMC Plant Biology27
32020Foreign DNA detection by high-throughput sequencing to regulate genome-edited agricultural productsTAKESHI ITOH ; Onuki, Ritsuko; Tsuda, Mai; Oshima, Masao; Endo, Masaki; Sakai, Hiroaki; Tanaka, Tsuyoshi; Ohsawa, Ryo; Tabei, YutakaScientific Reports12
42020Erratum: TASUKE+: A web-based platform for exploring GWAS results and large-scale resequencing data (DNA Research (2019) 26:6 (445–452) DOI: 10.1093/dnares/dsz022)Kumagai, Masahiko; Nishikawa, Daiki; Kawahara, Yoshihiro; Wakimoto, Hironobu; Itoh, Ryutaro; Tabei, Norio; Tanaka, Tsuyoshi; TAKESHI ITOH DNA Research
52020Mikan genome database (Migd): Integrated database of genome annotation, genomic diversity, and caps marker information for mandarin molecular breedingKawahara, Yoshihiro; Endo, Tomoko; Omura, Mitsuo; Teramoto, Yumiko; TAKESHI ITOH ; Fujii, Hiroshi; Shimada, TakehikoBreeding Science
62019Tasuke1: A web-based platform for exploring GWAS results and large-scale resequencing dataKumagai, Masahiko; Nishikawa, Daiki; Kawahara, Yoshihiro; Wakimoto, Hironobu; Itoh, Ryutaro; Tabei, Norio; Tanaka, Tsuyoshi; TAKESHI ITOH DNA Research19
72019Genome editing in plants by engineered CRISPR–Cas9 recognizing NG PAMEndo, Masaki; Mikami, Masafumi; Endo, Akira; Kaya, Hidetaka; TAKESHI ITOH ; Nishimasu, Hiroshi; Nureki, Osamu; Toki, SeiichiNature Plants129
82018Genome sequences of Oryza speciesKumagai, Masahiko; Tanaka, Tsuyoshi; Ohyanagi, Hajime; Hsing, Yue Ie C.; TAKESHI ITOH Rice Genomics, Genetics and Breeding
92018Databases for rice omics studiesTAKESHI ITOH ; Kawahara, Yoshihiro; Tanaka, TsuyoshiRice Genomics, Genetics and Breeding
102016The Nipponbare genome and the next-generation of rice genomics research in JapanMatsumoto, Takashi; Wu, Jianzhong; TAKESHI ITOH ; Numa, Hisataka; Antonio, Baltazar; Sasaki, TakujiRice
112016Genomic dissection of a ‘Fuji’ apple cultivar: Re-sequencing, SNP marker development, definition of haplotypes, and QTL detectionKunihisa, Miyuki; Moriya, Shigeki; Abe, Kazuyuki; Okada, Kazuma; Haji, Takashi; Hayashi, Takeshi; Kawahara, Yoshihiro; Itoh, Ryutaro; TAKESHI ITOH ; Katayose, Yuichi; Kanamori, Hiroyuki; Matsumoto, Toshimi; Mori, Satomi; Sasaki, Harumi; Matsumoto, Takashi; Nishitani, Chikako; Terakami, Shingo; Yamamoto, ToshiyaBreeding Science23
122016TENOR: Database for comprehensive mRNA-Seq experiments in riceKawahara, Yoshihiro; Oono, Youko; Wakimoto, Hironobu; Ogata, Jun; Kanamori, Hiroyuki; Sasaki, Harumi; Mori, Satomi; Matsumoto, Takashi; TAKESHI ITOH Plant and Cell Physiology
132016The Vigna genome server, 'VigGS': A genomic knowledge base of the genus Vigna based on high-quality, annotated genome sequence of the azuki bean, Vigna angularis (Willd.) Ohwi & OhashiSakai, Hiroaki; Naito, Ken; Takahashi, Yu; Sato, Toshiyuki; Yamamoto, Toshiya; Muto, Isamu; TAKESHI ITOH ; Tomooka, NorihikoPlant and Cell Physiology36
142015The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genomeSakai, Hiroaki; Naito, Ken; Ogiso-Tanaka, Eri; Takahashi, Yu; Iseki, Kohtaro; Muto, Chiaki; Satou, Kazuhito; Teruya, Kuniko; Shiroma, Akino; Shimoji, Makiko; Hirano, Takashi; TAKESHI ITOH ; Kaga, Akito; Tomooka, NorihikoScientific Reports55
152015Improvement of barley genome annotations by deciphering the Haruna Nijo genomeSato, Kazuhiro; Tanaka, Tsuyoshi; Shigenobu, Shuji; Motoi, Yuka; Wu, Jianzhong; TAKESHI ITOH DNA Research
162015Development of transcriptome shotgun assembly-derived markers in bunching onion (Allium fistulosum)Tsukazaki, Hikaru; Yaguchi, Shigenori; Sato, Shusei; Hirakawa, Hideki; Katayose, Yuichi; Kanamori, Hiroyuki; Kurita, Kanako; TAKESHI ITOH ; Kumagai, Masahiko; Mizuno, Satoshi; Hamada, Masao; Fukuoka, Hiroyuki; Yamashita, Ken ichiro; McCallum, John A.; Shigyo, Masayoshi; Wako, TadayukiMolecular Breeding
172015Whole-genome analysis of herbicide-tolerant mutant rice generated by agrobacterium-mediated gene targetingEndo, Masaki; Kumagai, Masahiko; Motoyama, Ritsuko; Sasaki-Yamagata, Harumi; Mori-Hosokawa, Satomi; Hamada, Masao; Kanamori, Hiroyuki; Nagamura, Yoshiaki; Katayose, Yuichi; TAKESHI ITOH ; Toki, SeiichiPlant and Cell Physiology18
182014A novel rice cytochrome P450 gene, CYP72A31, confers tolerance to acetolactate synthase-inhibiting herbicides in rice and arabidopsisSaika, Hiroaki; Horita, Junko; Taguchi-Shiobara, Fumio; Nonaka, Satoko; Nishizawa-Yokoi, Ayako; Iwakami, Satoshi; Hori, Kiyosumi; Matsumoto, Takashi; Tanaka, Tsuyoshi; TAKESHI ITOH ; Yano, Masahiro; Kaku, Koichiro; Shimizu, Tsutomu; Toki, SeiichiPlant Physiology98
192014Transcriptome analysis of barley identifies heat shock and HD-Zip I transcription factors up-regulated in response to multiple abiotic stressesMatsumoto, Takashi; Morishige, Hiromi; Tanaka, Tsuyoshi; Kanamori, Hiroyuki; Komatsuda, Takao; Sato, Kazuhiro; TAKESHI ITOH ; Wu, Jianzhong; Nakamura, ShingoMolecular Breeding
202014Genome-wide transcriptome analysis reveals that cadmium stress signaling controls the expression of genes in drought stress signal pathways in riceOono, Youko; Yazawa, Takayuki; Kawahara, Yoshihiro; Kanamori, Hiroyuki; Kobayashi, Fuminori; Sasaki, Harumi; Mori, Satomi; Wu, Jianzhong; Handa, Hirokazu; TAKESHI ITOH ; Matsumoto, TakashiPLoS ONE96
212014The First Monocot Genome Sequence: Oryza sativa (Rice)Sakai, Hiroaki; Tanaka, Tsuyoshi; Antonio, Baltazar A.; TAKESHI ITOH ; Sasaki, TakujiAdvances in Botanical Research
222014A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genomeLukaszewski, Adam J.; Alberti, Adriana; Sharpe, Andrew; Kilian, Andrzej; Stanca, Antonio Michele; Keller, Beat; Clavijo, Bernardo J.; Friebe, Bernd; Gill, Bikram; Wulff, Brande; Chapman, Brett; Steuernagel, Burkhard; Feuillet, Catherine; Viseux, Claire; Pozniak, Curtis; Rokhsar, Daniel S.; Klassen, Darrin; Edwards, David; Akhunov, Eduard; Paux, Etienne; Alfama, Françoise; Choulet, Frédéric; Kobayashi, Fuminori; Muehlbauer, Gary J.; Quesneville, Hadi; Šimková, Hana; Rimbert, Hélène; Gundlach, Heidrun; Budak, Hikmet; Sakai, Hiroaki; Handa, Hirokazu; Kanamori, Hiroyuki; Batley, Jacqueline; Vrána, Jan; Rogers, Jane; Číhalíková, Jarmila; Doležel, Jaroslav; Chapman, Jarrod; Poland, Jesse A.; Wu, Jianzhong; Khurana, Jitendra; Wright, Jonathan; Bader, Kai Christian; Eversole, Kellye; Barry, Kerrie; McLay, Kirsten; Mayer, Klaus F.X.; Singh, Kuldeep; Clissold, Leah; Pingault, Lise; Couderc, Loïc; Cattivelli, Luigi; Spannagl, Manuel; Kubaláková, Marie; Caccamo, Mario; Mascher, Martin; Bellgard, Matthew; Pfeifer, Matthias; Zytnicki, Matthias; Febrer, Melanie; Alaux, Michael; Martis, Mihaela M.; Loaec, Mikaël; Colaiacovo, Moreno; Singh, Nagendra K.; Glover, Natasha; Guilhot, Nicolas; Stein, Nils; Olsen, Odd Arne; Maclachlan, P. Ron; Chhuneja, Parveen; Wincker, Patrick; Sourdille, Pierre; Faccioli, Primetta; Ramirez-Gonzalez, Ricardo H.; Waugh, Robbie; Šperková, Romana; Knox, Ron; Appels, Rudi; Sharma, Sapna; Ayling, Sarah; Praud, Sebastien; Wang, Shichen; Lien, Sigbjørn; Sandve, Simen Rød; Matsumoto, Takashi; Endo, Takashi R.; TAKESHI ITOH ; Nussbaumer, Thomas; Wicker, Thomas; Tanaka, Tsuyoshi; Scholz, Uwe; Barbe, Valérie; Jamilloux, Véronique; Ogihara, Yasunari; Dubská, ZdeňkaScience1272
232014Genome interplay in the grain transcriptome of hexaploid bread wheatPfeifer, Matthias; Kugler, Karl G.; Sandve, Simen R.; Zhan, Bujie; Rudi, Heidi; Hvidsten, Torgeir R.; Mayer, Klaus F.X.; Olsen, Odd Arne; Rogers, Jane; Doležel, Jaroslav; Pozniak, Curtis; Eversole, Kellye; Feuillet, Catherine; Gill, Bikram; Friebe, Bernd; Lukaszewski, Adam J.; Sourdille, Pierre; Endo, Takashi R.; Kubaláková, Marie; Číhalíková, Jarmila; Dubská, Zdeňka; Vrána, Jan; Šperková, Romana; Šimková, Hana; Febrer, Melanie; Clissold, Leah; McLay, Kirsten; Singh, Kuldeep; Chhuneja, Parveen; Singh, Nagendra K.; Khurana, Jitendra; Akhunov, Eduard; Choulet, Frédéric; Alberti, Adriana; Barbe, Valérie; Wincker, Patrick; Kanamori, Hiroyuki; Kobayashi, Fuminori; TAKESHI ITOH ; Matsumoto, Takashi; Sakai, Hiroaki; Tanaka, Tsuyoshi; Wu, Jianzhong; Ogihara, Yasunari; Handa, Hirokazu; Maclachlan, P. Ron; Sharpe, Andrew; Klassen, Darrin; Edwards, David; Batley, Jacqueline; Lien, Sigbjørn; Steuernagel, Burkhard; Wulff, Brande; Caccamo, Mario; Ayling, Sarah; Ramirez-Gonzalez, Ricardo H.; Clavijo, Bernardo J.; Wright, Jonathan; Spannagl, Manuel; Martis, Mihaela M.; Mascher, Martin; Chapman, Jarrod; Poland, Jesse A.; Scholz, Uwe; Barry, Kerrie; Waugh, Robbie; Rokhsar, Daniel S.; Muehlbauer, Gary J.; Stein, Nils; Gundlach, Heidrun; Zytnicki, Matthias; Jamilloux, Véronique; Quesneville, Hadi; Wicker, Thomas; Faccioli, Primetta; Colaiacovo, Moreno; Stanca, Antonio Michele; Budak, Hikmet; Cattivelli, Luigi; Glover, Natasha; Pingault, Lise; Paux, Etienne; Sharma, Sapna; Appels, Rudi; Bellgard, Matthew; Chapman, Brett; Nussbaumer, Thomas; Bader, Kai Christian; Rimbert, Hélène; Wang, Shichen; Knox, Ron; Kilian, Andrzej; Alaux, Michael; Alfama, Françoise; Couderc, Loïc; Guilhot, Nicolas; Viseux, Claire; Loaec, Mikaël; Keller, BeatScience251
242014MEGANTE: A web-based system for integrated plant genome annotationNuma, Hisataka; TAKESHI ITOH Plant and Cell Physiology18
252014Next-generation survey sequencing and the molecular organization of wheat chromosome 6BTanaka, Tsuyoshi; Kobayashi, Fuminori; Joshi, Giri Prasad; Onuki, Ritsuko; Sakai, Hiroaki; Kanamori, Hiroyuki; Wu, Jianzhong; Šimková, Hana; Nasuda, Shuhei; Endo, Takashi R.; Hayakawa, Katsuyuki; Doležel, Jaroslav; Ogihara, Yasunari; TAKESHI ITOH ; Matsumoto, Takashi; Handa, HirokazuDNA Research36
262014Construction of pseudomolecule sequences of the aus rice cultivar Kasalath for comparative genomics of Asian cultivated riceHiroaki, Sakai; Hiroyuki, Kanamori; Yuko, Arai Kichise; Mari, Shibata Hatta; Kaworu, Ebana; Youko, Oono; Kanako, Kurita; Hiroko, Fujisawa; Satoshi, Katagiri; Yoshiyuki, Mukai; Masao, Hamada; TAKESHI ITOH ; Takashi, Matsumoto; Yuichi, Katayose; Kyo, Wakasa; Masahiro, Yano; Jianzhong, WuDNA Research
272014Ancient hybridizations among the ancestral genomes of bread wheatMarcussen, Thomas; Sandve, Simen R.; Heier, Lise; Spannagl, Manuel; Pfeifer, Matthias; Jakobsen, Kjetill S.; Wulff, Brande B.H.; Steuernagel, Burkhard; Mayer, Klaus F.X.; Olsen, Odd Arne; Rogers, Jane; Doležel, Jaroslav; Pozniak, Curtis; Eversole, Kellye; Feuillet, Catherine; Gill, Bikram; Friebe, Bernd; Lukaszewski, Adam J.; Sourdille, Pierre; Endo, Takashi R.; Kubaláková, Marie; Šíhalíková, Jarmila; Dubská, Zdeňka; Vrána, Jan; Šperková, Romana; Šimková, Hana; Febrer, Melanie; Clissold, Leah; McLay, Kirsten; Singh, Kuldeep; Chhuneja, Parveen; Singh, Nagendra K.; Khurana, Jitendra; Akhunov, Eduard; Choulet, Frédéric; Alberti, Adriana; Barbe, Valérie; Wincker, Patrick; Kanamori, Hiroyuki; Kobayashi, Fuminori; TAKESHI ITOH ; Matsumoto, Takashi; Sakai, Hiroaki; Tanaka, Tsuyoshi; Wu, Jianzhong; Ogihara, Yasunari; Handa, Hirokazu; Maclachlan, P. Ron; Sharpe, Andrew; Klassen, Darrin; Edwards, David; Batley, Jacqueline; Lien, Sigbjørn; Caccamo, Mario; Ayling, Sarah; Ramirez-Gonzalez, Ricardo H.; Clavijo, Bernardo J.; Wright, Jonathan; Martis, Mihaela M.; Mascher, Martin; Chapman, Jarrod; Poland, Jesse A.; Scholz, Uwe; Barry, Kerrie; Waugh, Robbie; Rokhsar, Daniel S.; Muehlbauer, Gary J.; Stein, Nils; Gundlach, Heidrun; Zytnicki, Matthias; Jamilloux, Véronique; Quesneville, Hadi; Wicker, Thomas; Faccioli, Primetta; Colaiacovo, Moreno; Stanca, Antonio Michele; Budak, Hikmet; Cattivelli, Luigi; Glover, Natasha; Pingault, Lise; Paux, Etienne; Sharma, Sapna; Appels, Rudi; Bellgard, Matthew; Chapman, Brett; Nussbaumer, Thomas; Bader, Kai Christian; Rimbert, Hélène; Wang, Shichen; Knox, Ron; Kilian, Andrzej; Alaux, Michael; Alfama, Françoise; Couderc, Loïc; Guilhot, Nicolas; Viseux, Claire; Loaec, Mikaël; Keller, Beat; Praud, SebastienScience495
282013A whole-genome analysis of a transgenic rice seed-based edible vaccine against cedar pollen allergyKawakatsu, Taiji; Kawahara, Yoshihiro; TAKESHI ITOH ; Takaiwa, FumioDNA Research30
292013Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profilesOono, Youko; Kawahara, Yoshihiro; Yazawa, Takayuki; Kanamori, Hiroyuki; Kuramata, Masato; Yamagata, Harumi; Hosokawa, Satomi; Minami, Hiroshi; Ishikawa, Satoru; Wu, Jianzhong; Antonio, Baltazar; Handa, Hirokazu; TAKESHI ITOH ; Matsumoto, TakashiPlant Molecular Biology43
302013Bex-db: Bioinformatics workbench for comprehensive analysis of barley-expressed genesTanaka, Tsuyoshi; Sakai, Hiroaki; Fujii, Nobuyuki; Kobayashi, Fuminori; Nakamura, Shingo; TAKESHI ITOH ; Matsumoto, Takashi; Wu, JianzhongBreeding Science5
312013Tasuke: A web-based visualization program for large-scale resequencing dataKumagai, Masahiko; Kim, Jungsok; Itoh, Ryutaro; TAKESHI ITOH Bioinformatics25
322013Improvement of the oryza sativa nipponbare reference genome using next generation sequence and optical map dataKawahara, Yoshihiro; de la Bastide, Melissa; Hamilton, John P.; Kanamori, Hiroyuki; Mccombie, W. Richard; Ouyang, Shu; Schwartz, David C.; Tanaka, Tsuyoshi; Wu, Jianzhong; Zhou, Shiguo; Childs, Kevin L.; Davidson, Rebecca M.; Lin, Haining; Quesada-Ocampo, Lina; Vaillancourt, Brieanne; Sakai, Hiroaki; Lee, Sung Shin; Kim, Jungsok; Numa, Hisataka; TAKESHI ITOH ; Buell, C. Robin; Matsumoto, TakashiRice1199
332013Characterisation of the wheat (triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: Gene expression in Pi-stressed wheatOono, Youko; Kobayashi, Fuminori; Kawahara, Yoshihiro; Yazawa, Takayuki; Handa, Hirokazu; TAKESHI ITOH ; Matsumoto, TakashiBMC Genomics94
342013Rice annotation project database (RAP-DB): An integrative and interactive database for rice genomicsSakai, Hiroaki; Lee, Sung Shin; Tanaka, Tsuyoshi; Numa, Hisataka; Kim, Jungsok; Kawahara, Yoshihiro; Wakimoto, Hironobu; Yang, Ching Chia; Iwamoto, Masao; Abe, Takashi; Yamada, Yuko; Muto, Akira; Inokuchi, Hachiro; Ikemura, Toshimichi; Matsumoto, Takashi; Sasaki, Takuji; TAKESHI ITOH Plant and Cell Physiology522
352013A reference rice genome sequence in the 10K Genome EraTAKESHI ITOH ; Antonio, Baltazar A.; Kawahara, Yoshihiro; Tanaka, Tsuyoshi; Sakai, Hiroaki; Matsumoto, Takashi; Sasaki, TakujiGenetics and Genomics of Rice
362012Global transcriptome analysis reveals distinct expression among duplicated genes during sorghum-interactionMizuno, Hiroshi; Kawahigashi, Hiroyuki; Kawahara, Yoshihiro; Kanamori, Hiroyuki; Ogata, Jun; Minami, Hiroshi; TAKESHI ITOH ; Matsumoto, TakashiBMC Plant Biology43
372012Nomenclature report on rice WRKY's - conflict regarding gene names and its solutionShen, Qingxi J.; Yu, Diqiu; Jeon, Jong Seong; Piffanelli, Pietro; Abbruscato, Pamela; Guo, Ze Jian; Zhang, Yuanji; TAKESHI ITOH ; Lee, Sung S.; Buell, C. Robin; Nagato, Yasuo; McCouch, Susan; Yano, Masahiro; Wang, Guo liang; Jena, Kshirod K.; Xiong, Lizhong; Meyers, Blake; Jaiswal, Pankaj; Yamazaki, YukikoRice37
382012Independent domestication of asian rice followed by gene flow from japonica to indicaYang, Ching Chia; Yoshihiro Kawahara; Mizuno, Hiroshi; Wu, Jianzhong; Matsumoto, Takashi; TAKESHI ITOH Molecular Biology and Evolution48
392012TriAnnot: A versatile and high performance pipeline for the automated annotation of plant genomesLeroy, Philippe; Guilhot, Nicolas; Sakai, Hiroaki; Bernard, Aurélien; Choulet, Frédéric; Theil, Sébastien; Reboux, Sébastien; Amano, Naoki; Flutre, Timothée; Pelegrin, Céline; Ohyanagi, Hajime; Seidel, Michael; Giacomoni, Franck; Reichstadt, Mathieu; Alaux, Michael; Gicquello, Emmanuelle; Legeai, Fabrice; Cerutti, Lorenzo; Numa, Hisataka; Tanaka, Tsuyoshi; Mayer, Klaus; TAKESHI ITOH ; Quesneville, Hadi; Feuillet, CatherineFrontiers in Plant Science60
402012Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interactionKawahara, Yoshihiro; Oono, Youko; Kanamori, Hiroyuki; Matsumoto, Takashi; TAKESHI ITOH ; Minami, EiichiPloS one214
412011Retrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genesSakai, Hiroaki; Mizuno, Hiroshi; Kawahara, Yoshihiro; Wakimoto, Hironobu; Ikawa, Hiroshi; Kawahigashi, Hiroyuki; Kanamori, Hiroyuki; Matsumoto, Takashi; TAKESHI ITOH ; Gaut, Brandon S.Genome Biology and Evolution45
422011Asymmetric distribution of gene expression in the centromeric region of rice chromosome 5Mizuno, Hiroshi; Kawahara, Yoshihiro; Wu, Jianzhong; Katayose, Yuichi; Kanamori, Hiroyuki; Ikawa, Hiroshi; TAKESHI ITOH ; Sasaki, Takuji; Matsumoto, TakashiFrontiers in Plant Science14
432011Distinct evolutionary patterns of Oryza glaberrima deciphered by genome sequencing and comparative analysisSakai, Hiroaki; Ikawa, Hiroshi; Tanaka, Tsuyoshi; Numa, Hisataka; Minami, Hiroshi; Fujisawa, Masaki; Shibata, Michie; Kurita, Kanako; Kikuta, Ari; Hamada, Masao; Kanamori, Hiroyuki; Namiki, Nobukazu; Wu, Jianzhong; TAKESHI ITOH ; Matsumoto, Takashi; Sasaki, TakujiPlant Journal25