Developing Single-Molecule TPM experiments for direct observation of successful RecA-Mediated strand exchange reaction
Journal
PLoS ONE
Journal Volume
6
Journal Issue
7
Date Issued
2011
Author(s)
Abstract
RecA recombinases play a central role in homologous recombination. Once assembled on single-stranded (ss) DNA, RecA nucleoprotein filaments mediate the pairing of homologous DNA sequences and strand exchange processes. We have designed two experiments based on tethered particle motion (TPM) to investigate the fates of the invading and the outgoing strands during E. coli RecA-mediated pairing and strand exchange at the single-molecule level in the absence of force. TPM experiments measure the tethered bead Brownian motion indicative of the DNA tether length change resulting from RecA binding and dissociation. Experiments with beads labeled on either the invading strand or the outgoing strand showed that DNA pairing and strand exchange occurs successfully in the presence of either ATP or its non-hydrolyzable analog, ATPγS. The strand exchange rates and efficiencies are similar under both ATP and ATPγS conditions. In addition, the Brownian motion time-courses suggest that the strand exchange process progresses uni-directionally in the 5′-to-3′ fashion, using a synapse segment with a wide and continuous size distribution. © 2011 Fan et al.
Other Subjects
adenosine triphosphate; RecA protein; adenosine 5' o (3 thiotriphosphate); adenosine 5'-O-(3-thiotriphosphate); bacterial DNA; complementary DNA; drug derivative; Escherichia coli protein; nucleotide; article; base pairing; controlled study; dissociation; DNA flanking region; DNA strand; enzyme binding; Holliday junction; homologous recombination; hydrolysis; protein function; biological model; enzymology; Escherichia coli; metabolism; methodology; molecular biology; motion; nucleic acid hybridization; time; Adenosine Triphosphate; DNA, Bacterial; DNA, Complementary; Escherichia coli; Escherichia coli Proteins; Hydrolysis; Models, Biological; Molecular Biology; Motion; Nucleic Acid Hybridization; Nucleotides; Rec A Recombinases; Time Factors
Type
journal article