An FPGA-Based Liquid Association Calculator for Genome-Wide Co-Expression Analysis
Journal
International Conference on Digital Signal Processing, DSP
Journal Volume
2018-November
Date Issued
2019
Author(s)
Abstract
In this paper, we implement a Liquid Association calculator on an Altera Stratix V FPGA. Using data from high throughput microarrays, the hardware is capable of analyzing whether the presence of a third gene can affect the correlation between the existing two genes. The runtime and power consumption of our FPGA implementation is only 45.5% and 8.14%, respectively, of those required by the GPU version.
SDGs
Type
conference paper