dc.relation.reference | Adam, S.A., Nakagawa, T., Swanson, M.S., Woodruff, T.K., and Dreyfuss, G. (1986). mRNA polyadenylate-binding protein: gene isolation and sequencing and identification of a ribonucleoprotein consensus sequence. Mol Cell Biol 6, 2932-2943.
Allmang, C., Petfalski, E., Podtelejnikov, A., Mann, M., Tollervey, D., and Mitchell, P. (1999). The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases. Genes Dev 13, 2148-2158.
Anderson, P., and Kedersha, N. (2002). Stressful initiations. J Cell Sci 115, 3227-3234.
Antic, D., and Keene, J.D. (1998). Messenger ribonucleoprotein complexes containing human ELAV proteins: interactions with cytoskeleton and translational apparatus. J Cell Sci 111 ( Pt 2), 183-197.
Ashe, M.P., De Long, S.K., and Sachs, A.B. (2000). Glucose depletion rapidly inhibits translation initiation in yeast. Mol Biol Cell 11, 833-848.
Bai, C., Sen, P., Hofmann, K., Ma, L., Goebl, M., Harper, J.W., and Elledge, S.J. (1996). SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box. Cell 86, 263-274.
Bandziulis, R.J., Swanson, M.S., and Dreyfuss, G. (1989). RNA-binding proteins as developmental regulators. Genes Dev 3, 431-437.
Beck, A.R., Miller, I.J., Anderson, P., and Streuli, M. (1998). RNA-binding protein TIAR is essential for primordial germ cell development. Proc Natl Acad Sci U S A 95, 2331-2336.
Bell, A.W., Ward, M.A., Blackstock, W.P., Freeman, H.N., Choudhary, J.S., Lewis, A.P., Chotai, D., Fazel, A., Gushue, J.N., Paiement, J., Palcy, S., Chevet, E., Lafreniere-Roula, M., Solari, R., Thomas, D.Y., Rowley, A., and Bergeron, J.J. (2001). Proteomics characterization of abundant Golgi membrane proteins. J Biol Chem 276, 5152-5165.
Bertrand, E., Chartrand, P., Schaefer, M., Shenoy, S.M., Singer, R.H., and Long, R.M. (1998). Localization of ASH1 mRNA particles in living yeast. Mol Cell 2, 437-445.
Bidlingmaier, S., and Snyder, M. (2002). Large-scale identification of genes important for apical growth in Saccharomyces cerevisiae by directed allele replacement technology (DART) screening. Funct Integr Genomics 1, 345-356.
Boeck, R., Tarun, S., Jr., Rieger, M., Deardorff, J.A., Muller-Auer, S., and Sachs, A.B. (1996). The yeast Pan2 protein is required for poly(A)-binding protein-stimulated poly(A)-nuclease activity. J Biol Chem 271, 432-438.
Bourbon, H.M., Lapeyre, B., and Amalric, F. (1988). Structure of the mouse nucleolin gene. The complete sequence reveals that each RNA binding domain is encoded by two independent exons. J Mol Biol 200, 627-638.
Bruhn, L., Hwang-Shum, J.J., and Sprague, G.F., Jr. (1992). The N-terminal 96 residues of MCM1, a regulator of cell type-specific genes in Saccharomyces cerevisiae, are sufficient for DNA binding, transcription activation, and interaction with alpha 1. Mol Cell Biol 12, 3563-3572.
Burd, C.G., and Dreyfuss, G. (1994). Conserved structures and diversity of functions of RNA-binding proteins. Science 265, 615-621.
Buu, L.M., Jang, L.T., and Lee, F.J. (2004). The yeast RNA-binding protein Rbp1p modifies the stability of mitochondrial porin mRNA. J Biol Chem 279, 453-462.
Calzada, A., Sanchez, M., Sanchez, E., and Bueno, A. (2000). The stability of the Cdc6 protein is regulated by cyclin-dependent kinase/cyclin B complexes in Saccharomyces cerevisiae. J Biol Chem 275, 9734-9741.
Caponigro, G., and Parker, R. (1996). Mechanisms and control of mRNA turnover in Saccharomyces cerevisiae. Microbiol Rev 60, 233-249.
Chun, K.T., and Goebl, M.G. (1996). The identification of transposon-tagged mutations in essential genes that affect cell morphology in Saccharomyces cerevisiae. Genetics 142, 39-50.
Chun, K.T., Mathias, N., and Goebl, M.G. (1996). Ubiquitin-dependent proteolysis and cell cycle control in yeast. Prog Cell Cycle Res 2, 115-127.
Coller, J., and Parker, R. (2004). Eukaryotic mRNA decapping. Annu Rev Biochem 73, 861-890.
Coller, J.M., Tucker, M., Sheth, U., Valencia-Sanchez, M.A., and Parker, R. (2001). The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes. Rna 7, 1717-1727.
Cougot, N., Babajko, S., and Seraphin, B. (2004). Cytoplasmic foci are sites of mRNA decay in human cells. J Cell Biol 165, 31-40.
Courey, A.J., and Tjian, R. (1988). Analysis of Sp1 in vivo reveals multiple transcriptional domains, including a novel glutamine-rich activation motif. Cell 55, 887-898.
Cowles, C.R., Snyder, W.B., Burd, C.G., and Emr, S.D. (1997). Novel Golgi to vacuole delivery pathway in yeast: identification of a sorting determinant and required transport component. Embo J 16, 2769-2782.
Daugeron, M.C., Mauxion, F., and Seraphin, B. (2001). The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation. Nucleic Acids Res 29, 2448-2455.
De Sampaio, G., Bourdineaud, J.P., and Lauquin, G.J. (1999). A constitutive role for GPI anchors in Saccharomyces cerevisiae: cell wall targeting. Mol Microbiol 34, 247-256.
DeAngelo, D.J., DeFalco, J., Rybacki, L., and Childs, G. (1995). The embryonic enhancer-binding protein SSAP contains a novel DNA-binding domain which has homology to several RNA-binding proteins. Mol Cell Biol 15, 1254-1264.
Deutschbauer, A.M., Williams, R.M., Chu, A.M., and Davis, R.W. (2002). Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 99, 15530-15535.
Dielbandhoesing, S.K., Zhang, H., Caro, L.H., van der Vaart, J.M., Klis, F.M., Verrips, C.T., and Brul, S. (1998). Specific cell wall proteins confer resistance to nisin upon yeast cells. Appl Environ Microbiol 64, 4047-4052.
Donaldson, J.G., and Honda, A. (2005). Localization and function of Arf family GTPases. Biochem Soc Trans 33, 639-642.
Dunand-Sauthier, I., Walker, C., Wilkinson, C., Gordon, C., Crane, R., Norbury, C., and Humphrey, T. (2002). Sum1, a component of the fission yeast eIF3 translation initiation complex, is rapidly relocalized during environmental stress and interacts with components of the 26S proteasome. Mol Biol Cell 13, 1626-1640.
Duttagupta, R., Tian, B., Wilusz, C.J., Khounh, D.T., Soteropoulos, P., Ouyang, M., Dougherty, J.P., and Peltz, S.W. (2005). Global analysis of Pub1p targets reveals a coordinate control of gene expression through modulation of binding and stability. Mol Cell Biol 25, 5499-5513.
Ekwall, K., Kermorgant, M., Dujardin, G., Groudinsky, O., and Slonimski, P.P. (1992). The NAM8 gene in Saccharomyces cerevisiae encodes a protein with putative RNA binding motifs and acts as a suppressor of mitochondrial splicing deficiencies when overexpressed. Mol Gen Genet 233, 136-144.
Feldman, R.M., Correll, C.C., Kaplan, K.B., and Deshaies, R.J. (1997). A complex of Cdc4p, Skp1p, and Cdc53p/cullin catalyzes ubiquitination of the phosphorylated CDK inhibitor Sic1p. Cell 91, 221-230.
Ficarro, S.B., McCleland, M.L., Stukenberg, P.T., Burke, D.J., Ross, M.M., Shabanowitz, J., Hunt, D.F., and White, F.M. (2002). Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat Biotechnol 20, 301-305.
Fillman, C., and Lykke-Andersen, J. (2005). RNA decapping inside and outside of processing bodies. Curr Opin Cell Biol 17, 326-331.
Finger, F.P., Hughes, T.E., and Novick, P. (1998). Sec3p is a spatial landmark for polarized secretion in budding yeast. Cell 92, 559-571.
Finger, F.P., and Novick, P. (1998). Spatial regulation of exocytosis: lessons from yeast. J Cell Biol 142, 609-612.
Fischer, N., and Weis, K. (2002). The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1. Embo J 21, 2788-2797.
Fribourg, S., Gatfield, D., Izaurralde, E., and Conti, E. (2003). A novel mode of RBD-protein recognition in the Y14-Mago complex. Nat Struct Biol 10, 433-439.
Goldstein, A.L., and McCusker, J.H. (1999). Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15, 1541-1553.
Golemis, E.A., and Khazak, V. (1997). Alternative yeast two-hybrid systems. The interaction trap and interaction mating. Methods Mol Biol 63, 197-218.
Hamada, K., Terashima, H., Arisawa, M., Yabuki, N., and Kitada, K. (1999). Amino acid residues in the omega-minus region participate in cellular localization of yeast glycosylphosphatidylinositol-attached proteins. J Bacteriol 181, 3886-3889.
Han, A.P., Yu, C., Lu, L., Fujiwara, Y., Browne, C., Chin, G., Fleming, M., Leboulch, P., Orkin, S.H., and Chen, J.J. (2001). Heme-regulated eIF2alpha kinase (HRI) is required for translational regulation and survival of erythroid precursors in iron deficiency. Embo J 20, 6909-6918.
Harding, H.P., Novoa, I., Zhang, Y., Zeng, H., Wek, R., Schapira, M., and Ron, D. (2000). Regulated translation initiation controls stress-induced gene expression in mammalian cells. Mol Cell 6, 1099-1108.
Herrick, D., Parker, R., and Jacobson, A. (1990). Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae. Mol Cell Biol 10, 2269-2284.
Heyer, W.D., Johnson, A.W., Reinhart, U., and Kolodner, R.D. (1995). Regulation and intracellular localization of Saccharomyces cerevisiae strand exchange protein 1 (Sep1/Xrn1/Kem1), a multifunctional exonuclease. Mol Cell Biol 15, 2728-2736.
Hill, C.S., Packman, L.C., and Thomas, J.O. (1990). Phosphorylation at clustered -Ser-Pro-X-Lys/Arg- motifs in sperm-specific histones H1 and H2B. Embo J 9, 805-813.
Hilleren, P., and Parker, R. (1999). Mechanisms of mRNA surveillance in eukaryotes. Annu Rev Genet 33, 229-260.
Hilt, W., and Wolf, D.H. (1996). Proteasomes: destruction as a programme. Trends Biochem Sci 21, 96-102.
Huang, C.F., Buu, L.M., Yu, W.L., and Lee, F.J. (1999). Characterization of a novel ADP-ribosylation factor-like protein (yARL3) in Saccharomyces cerevisiae. J Biol Chem 274, 3819-3827.
Huang, C.F., Liu, Y.W., Tung, L., Lin, C.H., and Lee, F.J. (2003). Role for Arf3p in development of polarity, but not endocytosis, in Saccharomyces cerevisiae. Mol Biol Cell 14, 3834-3847.
Hudspeth, M.E., Ainley, W.M., Shumard, D.S., Butow, R.A., and Grossman, L.I. (1982). Location and structure of the var1 gene on yeast mitochondrial DNA: nucleotide sequence of the 40.0 allele. Cell 30, 617-626.
Ingelfinger, D., Arndt-Jovin, D.J., Luhrmann, R., and Achsel, T. (2002). The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci. Rna 8, 1489-1501.
Ito, H., Fukuda, Y., Murata, K., and Kimura, A. (1983). Transformation of intact yeast cells treated with alkali cations. J Bacteriol 153, 163-168.
Ito, T., Chiba, T., Ozawa, R., Yoshida, M., Hattori, M., and Sakaki, Y. (2001). A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci U S A 98, 4569-4574.
Iwamoto, M.A., Fairclough, S.R., Rudge, S.A., and Engebrecht, J. (2005). Saccharomyces cerevisiae Sps1p regulates trafficking of enzymes required for spore wall synthesis. Eukaryot Cell 4, 536-544.
Jacobson, A., and Peltz, S.W. (1996). Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells. Annu Rev Biochem 65, 693-739.
Kaiser, P., Moncollin, V., Clarke, D.J., Watson, M.H., Bertolaet, B.L., Reed, S.I., and Bailly, E. (1999). Cyclin-dependent kinase and Cks/Suc1 interact with the proteasome in yeast to control proteolysis of M-phase targets. Genes Dev 13, 1190-1202.
Kedersha, N., Chen, S., Gilks, N., Li, W., Miller, I.J., Stahl, J., and Anderson, P. (2002). Evidence that ternary complex (eIF2-GTP-tRNA(i)(Met))-deficient preinitiation complexes are core constituents of mammalian stress granules. Mol Biol Cell 13, 195-210.
Kedersha, N., Cho, M.R., Li, W., Yacono, P.W., Chen, S., Gilks, N., Golan, D.E., and Anderson, P. (2000). Dynamic shuttling of TIA-1 accompanies the recruitment of mRNA to mammalian stress granules. J Cell Biol 151, 1257-1268.
Kedersha, N., Stoecklin, G., Ayodele, M., Yacono, P., Lykke-Andersen, J., Fitzler, M.J., Scheuner, D., Kaufman, R.J., Golan, D.E., and Anderson, P. (2005). Stress granules and processing bodies are dynamically linked sites of mRNP remodeling. J Cell Biol 169, 871-884.
Keller, P., and Simons, K. (1997). Post-Golgi biosynthetic trafficking. J Cell Sci 110 ( Pt 24), 3001-3009.
Kuma, K., Iwabe, N., Kawanishi, Y., and Miyata, T. (1990). RNA-binding protein-related sequence in a malaria antigen, clustered-asparagine-rich protein. FEBS Lett 260, 67-69.
Lee, F.J., Huang, C.F., Yu, W.L., Buu, L.M., Lin, C.Y., Huang, M.C., Moss, J., and Vaughan, M. (1997). Characterization of an ADP-ribosylation factor-like 1 protein in Saccharomyces cerevisiae. J Biol Chem 272, 30998-31005.
Lee, F.J., Stevens, L.A., Kao, Y.L., Moss, J., and Vaughan, M. (1994). Characterization of a glucose-repressible ADP-ribosylation factor 3 (ARF3) from Saccharomyces cerevisiae. J Biol Chem 269, 20931-20937.
Lee, W.C., Zabetakis, D., and Melese, T. (1992). NSR1 is required for pre-rRNA processing and for the proper maintenance of steady-state levels of ribosomal subunits. Mol Cell Biol 12, 3865-3871.
Lew, D.J., and Reed, S.I. (1993). Morphogenesis in the yeast cell cycle: regulation by Cdc28 and cyclins. J Cell Biol 120, 1305-1320.
Lew, D.J., and S, I.R. (1992). A proliferation of cyclins. Trends Cell Biol 2, 77-81.
Li, B., and Warner, J.R. (1996). Mutation of the Rab6 homologue of Saccharomyces cerevisiae, YPT6, inhibits both early Golgi function and ribosome biosynthesis. J Biol Chem 271, 16813-16819.
Liu, H., Rodgers, N.D., Jiao, X., and Kiledjian, M. (2002). The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases. Embo J 21, 4699-4708.
Liu, Y.W., Huang, C.F., Huang, K.B., and Lee, F.J. (2005). Role for Gcs1p in Regulation of Arl1p at Trans-Golgi Compartments. Mol Biol Cell.
Longtine, M.S., McKenzie, A., 3rd, Demarini, D.J., Shah, N.G., Wach, A., Brachat, A., Philippsen, P., and Pringle, J.R. (1998). Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14, 953-961.
Lu, L., Han, A.P., and Chen, J.J. (2001). Translation initiation control by heme-regulated eukaryotic initiation factor 2alpha kinase in erythroid cells under cytoplasmic stresses. Mol Cell Biol 21, 7971-7980.
Luo, Z., and Gallwitz, D. (2003). Biochemical and genetic evidence for the involvement of yeast Ypt6-GTPase in protein retrieval to different Golgi compartments. J Biol Chem 278, 791-799.
Lykke-Andersen, J. (2002). Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay. Mol Cell Biol 22, 8114-8121.
Mathias, N., Johnson, S.L., Winey, M., Adams, A.E., Goetsch, L., Pringle, J.R., Byers, B., and Goebl, M.G. (1996). Cdc53p acts in concert with Cdc4p and Cdc34p to control the G1-to-S-phase transition and identifies a conserved family of proteins. Mol Cell Biol 16, 6634-6643.
Matunis, M.J., Matunis, E.L., and Dreyfuss, G. (1993). PUB1: a major yeast poly(A)+ RNA-binding protein. Mol Cell Biol 13, 6114-6123.
Mazan-Mamczarz, K., Lal, A., Martindale, J.L., Kawai, T., and Gorospe, M. (2006). Translational repression by RNA-binding protein TIAR. Mol Cell Biol 26, 2716-2727.
Mazzoni, C., Zarov, P., Rambourg, A., and Mann, C. (1993). The SLT2 (MPK1) MAP kinase homolog is involved in polarized cell growth in Saccharomyces cerevisiae. J Cell Biol 123, 1821-1833.
McCarthy, J.E. (1998). Posttranscriptional control of gene expression in yeast. Microbiol Mol Biol Rev 62, 1492-1553.
Messias, A.C., and Sattler, M. (2004). Structural basis of single-stranded RNA recognition. Acc Chem Res 37, 279-287.
Meyer, S., Temme, C., and Wahle, E. (2004). Messenger RNA turnover in eukaryotes: pathways and enzymes. Crit Rev Biochem Mol Biol 39, 197-216.
Miesfeld, R., Rusconi, S., Godowski, P.J., Maler, B.A., Okret, S., Wikstrom, A.C., Gustafsson, J.A., and Yamamoto, K.R. (1986). Genetic complementation of a glucocorticoid receptor deficiency by expression of cloned receptor cDNA. Cell 46, 389-399.
Minvielle-Sebastia, L., Winsor, B., Bonneaud, N., and Lacroute, F. (1991). Mutations in the yeast RNA14 and RNA15 genes result in an abnormal mRNA decay rate; sequence analysis reveals an RNA-binding domain in the RNA15 protein. Mol Cell Biol 11, 3075-3087.
Moore, M.J. (2005). From birth to death: the complex lives of eukaryotic mRNAs. Science 309, 1514-1518.
Nakashima-Kamimura, N., Asoh, S., Ishibashi, Y., Mukai, Y., Shidara, Y., Oda, H., Munakata, K., Goto, Y., and Ohta, S. (2005). MIDAS/GPP34, a nuclear gene product, regulates total mitochondrial mass in response to mitochondrial dysfunction. J Cell Sci 118, 5357-5367.
Parker, R., and Song, H. (2004). The enzymes and control of eukaryotic mRNA turnover. Nat Struct Mol Biol 11, 121-127.
Passmore, S., Maine, G.T., Elble, R., Christ, C., and Tye, B.K. (1988). Saccharomyces cerevisiae protein involved in plasmid maintenance is necessary for mating of MAT alpha cells. J Mol Biol 204, 593-606.
Pearson, R.B., and Kemp, B.E. (1991). Protein kinase phosphorylation site sequences and consensus specificity motifs: tabulations. Methods Enzymol 200, 62-81.
Pfeifer, K., Kim, K.S., Kogan, S., and Guarente, L. (1989). Functional dissection and sequence of yeast HAP1 activator. Cell 56, 291-301.
Pickart, C.M. (2001). Mechanisms underlying ubiquitination. Annu Rev Biochem 70, 503-533.
Pinkham, J.L., Olesen, J.T., and Guarente, L.P. (1987). Sequence and nuclear localization of the Saccharomyces cerevisiae HAP2 protein, a transcriptional activator. Mol Cell Biol 7, 578-585.
Piper, R.C., Bryant, N.J., and Stevens, T.H. (1997). The membrane protein alkaline phosphatase is delivered to the vacuole by a route that is distinct from the VPS-dependent pathway. J Cell Biol 138, 531-545.
Pirrotta, V., Manet, E., Hardon, E., Bickel, S.E., and Benson, M. (1987). Structure and sequence of the Drosophila zeste gene. Embo J 6, 791-799.
Pringle, J.R., Preston, R.A., Adams, A.E., Stearns, T., Drubin, D.G., Haarer, B.K., and Jones, E.W. (1989). Fluorescence microscopy methods for yeast. Methods Cell Biol 31, 357-435.
Pruyne, D., and Bretscher, A. (2000). Polarization of cell growth in yeast. I. Establishment and maintenance of polarity states. J Cell Sci 113 ( Pt 3), 365-375.
Puig, O., Gottschalk, A., Fabrizio, P., and Seraphin, B. (1999). Interaction of the U1 snRNP with nonconserved intronic sequences affects 5' splice site selection. Genes Dev 13, 569-580.
Raijmakers, R., Egberts, W.V., van Venrooij, W.J., and Pruijn, G.J. (2003). The association of the human PM/Scl-75 autoantigen with the exosome is dependent on a newly identified N terminus. J Biol Chem 278, 30698-30704.
Reed, S.I., and Wittenberg, C. (1990). Mitotic role for the Cdc28 protein kinase of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 87, 5697-5701.
Rehling, P., Darsow, T., Katzmann, D.J., and Emr, S.D. (1999). Formation of AP-3 transport intermediates requires Vps41 function. Nat Cell Biol 1, 346-353.
Reid, B.J., and Hartwell, L.H. (1977). Regulation of mating in the cell cycle of Saccharomyces cerevisiae. J Cell Biol 75, 355-365.
Robinow, S., Campos, A.R., Yao, K.M., and White, K. (1988). The elav gene product of Drosophila, required in neurons, has three RNP consensus motifs. Science 242, 1570-1572.
Rodriguez-Pena, J.M., Cid, V.J., Arroyo, J., and Nombela, C. (2000). A novel family of cell wall-related proteins regulated differently during the yeast life cycle. Mol Cell Biol 20, 3245-3255.
Rodriguez-Pena, J.M., Rodriguez, C., Alvarez, A., Nombela, C., and Arroyo, J. (2002). Mechanisms for targeting of the Saccharomyces cerevisiae GPI-anchored cell wall protein Crh2p to polarised growth sites. J Cell Sci 115, 2549-2558.
Romisch, K., Webb, J., Lingelbach, K., Gausepohl, H., and Dobberstein, B. (1990). The 54-kD protein of signal recognition particle contains a methionine-rich RNA binding domain. J Cell Biol 111, 1793-1802.
Rua, D., Tobe, B.T., and Kron, S.J. (2001). Cell cycle control of yeast filamentous growth. Curr Opin Microbiol 4, 720-727.
Sachs, A.B., Bond, M.W., and Kornberg, R.D. (1986). A single gene from yeast for both nuclear and cytoplasmic polyadenylate-binding proteins: domain structure and expression. Cell 45, 827-835.
Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd Ed.
, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
Samson, M.L. (1998). Evidence for 3' untranslated region-dependent autoregulation of the Drosophila gene encoding the neuronal nuclear RNA-binding protein ELAV. Genetics 150, 723-733.
Schwob, E., Bohm, T., Mendenhall, M.D., and Nasmyth, K. (1994). The B-type cyclin kinase inhibitor p40SIC1 controls the G1 to S transition in S. cerevisiae. Cell 79, 233-244.
Seaman, M.N., McCaffery, J.M., and Emr, S.D. (1998). A membrane coat complex essential for endosome-to-Golgi retrograde transport in yeast. J Cell Biol 142, 665-681.
Sherman, F., Fink, G.R., and Hicks, J.B. (1986). Methods in Yeast Genetics
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
Sheth, U., and Parker, R. (2003). Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300, 805-808.
Sheu, Y.J., Barral, Y., and Snyder, M. (2000). Polarized growth controls cell shape and bipolar bud site selection in Saccharomyces cerevisiae. Mol Cell Biol 20, 5235-5247.
Shi, H., and Xu, R.M. (2003). Crystal structure of the Drosophila Mago nashi-Y14 complex. Genes Dev 17, 971-976.
Singer, T., Haefner, S., Hoffmann, M., Fischer, M., Ilyina, J., and Hilt, W. (2003). Sit4 phosphatase is functionally linked to the ubiquitin-proteasome system. Genetics 164, 1305-1321.
Siomi, H., Matunis, M.J., Michael, W.M., and Dreyfuss, G. (1993). The pre-mRNA binding K protein contains a novel evolutionarily conserved motif. Nucleic Acids Res 21, 1193-1198.
Stahl, G., Salem, S.N., Chen, L., Zhao, B., and Farabaugh, P.J. (2004). Translational accuracy during exponential, postdiauxic, and stationary growth phases in Saccharomyces cerevisiae. Eukaryot Cell 3, 331-338.
Stearns, T., Willingham, M.C., Botstein, D., and Kahn, R.A. (1990). ADP-ribosylation factor is functionally and physically associated with the Golgi complex. Proc Natl Acad Sci U S A 87, 1238-1242.
Stefl, R., Skrisovska, L., and Allain, F.H. (2005). RNA sequence- and shape-dependent recognition by proteins in the ribonucleoprotein particle. EMBO Rep 6, 33-38.
Surana, U., Robitsch, H., Price, C., Schuster, T., Fitch, I., Futcher, A.B., and Nasmyth, K. (1991). The role of CDC28 and cyclins during mitosis in the budding yeast S. cerevisiae. Cell 65, 145-161.
Suzuki, Y., Nogi, Y., Abe, A., and Fukasawa, T. (1988). GAL11 protein, an auxiliary transcription activator for genes encoding galactose-metabolizing enzymes in Saccharomyces cerevisiae. Mol Cell Biol 8, 4991-4999.
Taupin, J.L., Tian, Q., Kedersha, N., Robertson, M., and Anderson, P. (1995). The RNA-binding protein TIAR is translocated from the nucleus to the cytoplasm during Fas-mediated apoptotic cell death. Proc Natl Acad Sci U S A 92, 1629-1633.
Teixeira, D., Sheth, U., Valencia-Sanchez, M.A., Brengues, M., and Parker, R. (2005). Processing bodies require RNA for assembly and contain nontranslating mRNAs. Rna 11, 371-382.
TerBush, D.R., and Novick, P. (1995). Sec6, Sec8, and Sec15 are components of a multisubunit complex which localizes to small bud tips in Saccharomyces cerevisiae. J Cell Biol 130, 299-312.
Tian, Q., Streuli, M., Saito, H., Schlossman, S.F., and Anderson, P. (1991). A polyadenylate binding protein localized to the granules of cytolytic lymphocytes induces DNA fragmentation in target cells. Cell 67, 629-639.
Tong, A.H., Lesage, G., Bader, G.D., Ding, H., Xu, H., Xin, X., Young, J., Berriz, G.F., Brost, R.L., Chang, M., Chen, Y., Cheng, X., Chua, G., Friesen, H., Goldberg, D.S., Haynes, J., Humphries, C., He, G., Hussein, S., Ke, L., Krogan, N., Li, Z., Levinson, J.N., Lu, H., Menard, P., Munyana, C., Parsons, A.B., Ryan, O., Tonikian, R., Roberts, T., Sdicu, A.M., Shapiro, J., Sheikh, B., Suter, B., Wong, S.L., Zhang, L.V., Zhu, H., Burd, C.G., Munro, S., Sander, C., Rine, J., Greenblatt, J., Peter, M., Bretscher, A., Bell, G., Roth, F.P., Brown, G.W., Andrews, B., Bussey, H., and Boone, C. (2004). Global mapping of the yeast genetic interaction network. Science 303, 808-813.
Tseng-Rogenski, S.S., Chong, J.L., Thomas, C.B., Enomoto, S., Berman, J., and Chang, T.H. (2003). Functional conservation of Dhh1p, a cytoplasmic DExD/H-box protein present in large complexes. Nucleic Acids Res 31, 4995-5002.
Tucker, M., and Parker, R. (2000). Mechanisms and control of mRNA decapping in Saccharomyces cerevisiae. Annu Rev Biochem 69, 571-595.
Tucker, M., Staples, R.R., Valencia-Sanchez, M.A., Muhlrad, D., and Parker, R. (2002). Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae. Embo J 21, 1427-1436.
Tucker, M., Valencia-Sanchez, M.A., Staples, R.R., Chen, J., Denis, C.L., and Parker, R. (2001). The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae. Cell 104, 377-386.
Uesono, Y., and Toh, E.A. (2002). Transient inhibition of translation initiation by osmotic stress. J Biol Chem 277, 13848-13855.
Vida, T.A., and Emr, S.D. (1995). A new vital stain for visualizing vacuolar membrane dynamics and endocytosis in yeast. J Cell Biol 128, 779-792.
Wahlgren, M., Aslund, L., Franzen, L., Sundvall, M., Wahlin, B., Berzins, K., McNicol, L.A., Bjorkman, A., Wigzell, H., Perlmann, P., and et al. (1986). A Plasmodium falciparum antigen containing clusters of asparagine residues. Proc Natl Acad Sci U S A 83, 2677-2681.
Wang, Y., Liu, C.L., Storey, J.D., Tibshirani, R.J., Herschlag, D., and Brown, P.O. (2002). Precision and functional specificity in mRNA decay. Proc Natl Acad Sci U S A 99, 5860-5865.
Wharton, K.A., Yedvobnick, B., Finnerty, V.G., and Artavanis-Tsakonas, S. (1985). opa: a novel family of transcribed repeats shared by the Notch locus and other developmentally regulated loci in D. melanogaster. Cell 40, 55-62.
Wickens, M., and Goldstrohm, A. (2003). Molecular biology. A place to die, a place to sleep. Science 300, 753-755.
Wild, K., Halic, M., Sinning, I., and Beckmann, R. (2004). SRP meets the ribosome. Nat Struct Mol Biol 11, 1049-1053.
Willems, A.R., Lanker, S., Patton, E.E., Craig, K.L., Nason, T.F., Mathias, N., Kobayashi, R., Wittenberg, C., and Tyers, M. (1996). Cdc53 targets phosphorylated G1 cyclins for degradation by the ubiquitin proteolytic pathway. Cell 86, 453-463.
Williams, B.R. (2001). Signal integration via PKR. Sci STKE 2001, RE2.
Wilusz, C.J., Wormington, M., and Peltz, S.W. (2001). The cap-to-tail guide to mRNA turnover. Nat Rev Mol Cell Biol 2, 237-246.
Wu, C.C., Taylor, R.S., Lane, D.R., Ladinsky, M.S., Weisz, J.A., and Howell, K.E. (2000). GMx33: a novel family of trans-Golgi proteins identified by proteomics. Traffic 1, 963-975.
Xiong, Y., and Beach, D. (1991). Population explosion in the cyclin family. Curr Biol 1, 362-364.
Yahara, N., Ueda, T., Sato, K., and Nakano, A. (2001). Multiple roles of Arf1 GTPase in the yeast exocytic and endocytic pathways. Mol Biol Cell 12, 221-238.
Zopf, D., Bernstein, H.D., Johnson, A.E., and Walter, P. (1990). The methionine-rich domain of the 54 kd protein subunit of the signal recognition particle contains an RNA binding site and can be crosslinked to a signal sequence. Embo J 9, 4511-4517. | en |