Wang, Li-TzuLi-TzuWangWang, Hsiu-HuanHsiu-HuanWangJiang, Shih-ShengShih-ShengJiangChang, Chia-ChihChia-ChihChangHsu, Pei-JuPei-JuHsuLiu, Ko-JiunnKo-JiunnLiuSytwu, Huey-KangHuey-KangSytwuYen, B LinjuB LinjuYenMEN-LUH YEN2025-05-142025-05-142025-05https://scholars.lib.ntu.edu.tw/handle/123456789/729279The clinical efficacy of mesenchymal stem cell (MSC) therapy for inflammatory bowel disease (IBD) is inconsistent and often fails to match promising preclinical findings. To improve outcome, we compared MSCs isolated from human uterine myometrium (Ut), a readily-available tissue source from a unique immune niche, to bone marrow (BM) MSCs, the most common source, in a murine IBD model with mechanisms underlying differential effects. In this study, human BMMSCs and UtMSCs were intravenously administered to mice with dextran sulfate sodium-induced colitis and evaluated for disease activity, microbiome composition, and cellular immunity. Bioinformatics analyses including patient data were performed to further specify involved mechanisms with subsequent functional validation performed. We found that UtMSC but not BMMSC treatment significantly reversed disease parameters by improving microbiome and reducing mesenteric lymph node IFN-γ and IL-17A-secreting T cells. Transcriptomic analysis revealed UtMSCs had reduced MHC II pathway activation compared to BMMSCs. Functional validation confirmed UtMSCs compared to BMMSCs expressed lower IFN-γ receptors, prevent MHC II-mediated human unstimulated T cell activation, and modulated stimulated T helper (Th) cells away from effector phenotypes while increasing regulatory T cells (Tregs) and IL-10 levels. Bioinformatics from IBD patients resistant to non-T cell-specific therapies implicated persistent MHC II-mediated Th1/Th17 activation as key drivers of disease. Overall, UtMSCs outperformed BMMSCs in improving microbiota, avoiding IFN-γ responses, and modulating overall Th responses, suggesting this MSC source may offer more significant effectiveness for IBD and Th1/Th17-mediated conditions. Our findings also highlight that understanding MSC source-specific therapeutic mechanisms is crucial for optimizing clinical therapies.enBone marrow (BM)Human mesenchymal stem cells (MSCs)Inflammatory bowel disease (IBD)Interferon-γ (IFN-γ)Major Histocompatibility Complex (MHC)Uterine myometrium (Ut) MSCs[SDGs]SDG3journal article10.1016/j.phrs.2025.10771640154933