https://scholars.lib.ntu.edu.tw/handle/123456789/633748
標題: | An Alignment-Based Hardware Accelerator for Rapid Prediction of RNA Secondary Structures | 作者: | Weng, Shih Shiuan Yeh, Yang Ming Li, Yu Cheng YI-CHANG LU |
關鍵字: | Dynamic programming | Hardware Accelerator | RNA Secondary Structure | 公開日期: | 1-一月-2022 | 卷: | 2022-May | 來源出版物: | Proceedings - IEEE International Symposium on Circuits and Systems | 摘要: | The Zuker algorithm is a widely-adopted method for rapid prediction of RNA secondary structures. In this work, we present a new hardware architecture based on the algorithm and implement its accelerator using TSMC 40-nm technology. The proposed architecture is capable of handling more types of dangling bases when compared to the previous hardware work. Besides, with better data re-use, the idling time and memory usage of our hardware modules can be effectively reduced, and thus a higher processing speed can be achieved. Compared to the well-known software approach, RNAstructure, our 16-processing-element design has an 11 times speedup for RNA sequences around 3000 bases. |
URI: | https://scholars.lib.ntu.edu.tw/handle/123456789/633748 | ISBN: | 9781665484855 | ISSN: | 02714310 | DOI: | 10.1109/ISCAS48785.2022.9937240 |
顯示於: | 電機工程學系 |
在 IR 系統中的文件,除了特別指名其著作權條款之外,均受到著作權保護,並且保留所有的權利。