https://scholars.lib.ntu.edu.tw/handle/123456789/639068
標題: | TENOR: Database for comprehensive mRNA-Seq experiments in rice | 作者: | Kawahara, Yoshihiro Oono, Youko Wakimoto, Hironobu Ogata, Jun Kanamori, Hiroyuki Sasaki, Harumi Mori, Satomi Matsumoto, Takashi TAKESHI ITOH |
關鍵字: | Abiotic stress | Database | mRNA-Seq | Nextgeneration sequencing | Plant hormone | Rice | 公開日期: | 1-一月-2016 | 卷: | 57 | 期: | 1 | 來源出版物: | Plant and Cell Physiology | 摘要: | Here we present TENOR (Transcriptome ENcyclopedia Of Rice, http://tenor.dna.affrc.go.jp), a database that encompasses large-scale mRNA sequencing (mRNA-Seq) data obtained from rice under a wide variety of conditions. Since the elucidation of the ability of plants to adapt to various growing conditions is a key issue in plant sciences, it is of great interest to understand the regulatory networks of genes responsible for environmental changes. We used mRNA-Seq and performed a time-course transcriptome analysis of rice, Oryza sativa L. (cv. Nipponbare), under 10 abiotic stress conditions (high salinity; high and low phosphate; high, low and extremely low cadmium; drought; osmotic; cold; and flood) and two plant hormone treatment conditions (ABA and jasmonic acid). A large number of genes that were responsive to abiotic stresses and plant hormones were detected by differential expression analysis. Furthermore, several responsive genes were found to encode transcription factors that could control the transcriptional network of stress responses, but the timing of the induction of these genes was not uniform across conditions. A significant number of cis-regulatory elements were enriched in the promoter regions of the responsive genes and were shared among conditions. These data suggest that some key components of gene regulation networks are shared between different stress signaling pathways. All the resources (novel genes identified from mRNA-Seq data, expression profiles, co-expressed genes and cis-regulatory elements) can be searched for and are available in TENOR. |
URI: | https://www.scopus.com/inward/record.uri?eid=2-s2.0-84964875379&doi=10.1093%2fpcp%2fpcv179&partnerID=40&md5=60877b4bcb4aa1ae78d6045ccca4f49c https://scholars.lib.ntu.edu.tw/handle/123456789/639068 |
ISSN: | 00320781 | DOI: | 10.1093/pcp/pcv179 |
顯示於: | 全球農業科技與基因體科學碩士學位學程 |
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