研究成果


第 1 到 99 筆結果，共 99 筆。

公開日期標題作者來源出版物scopusWOS全文
12024Insulin-like growth factor 2 mRNA-binding protein 3 enhanced melanoma migration through regulation of AKT1 and RELA expressionYI-SHUAN SHEEN ; Syu, Yan-Jie; Chang, Yu-Chuan; Hsieh, Ping-Han; YI-HUA LIAO ; Lin, Ming-Hsien; CHIEN-YU CHEN ; CHIA-YU CHU ; CHIA-YING CHU Experimental dermatology0
22024Complete genomic profiles of 1496 Taiwanese reveal curated medical insightsJacob Shujui Hsu ; Wu, Dung Chi; Shih, Shang Hung; Liu, Jen Feng; Tsai, Ya Chen; Lee, Tung Lin; Chen, Wei An; Tseng, Yi Hsuan; Lo, Yi Chung; Lin, Hong Ye; Chen, Yi Chieh; Chen, Jing Yi; Chou, Ting Hsuan; Chang, Darby Tien Hao; Su, Ming Wei; Guo, Wei Hong; Mao, Hsin Hsiang; CHIEN-YU CHEN ; PEI-LUNG CHEN Journal of Advanced Research0
32023Monitoring Cultured Rat Hepatocytes Using RNA-Seq In VitroYUNG-TE HOU ; Wu, Chia Chun; Wang, Wen Ting; Yang, Wen Tse; Liao, Ying Hsiu; CHIEN-YU CHEN International Journal of Molecular Sciences21
42022PREDICTED PROTEIN STRUCTURE VARIATIONS INDICATE THE CLINICAL PRESENTATION OF CYP4V2 -RELATED BIETTI CRYSTALLINE DYSTROPHYChan, Li Wei; Sung, Yu Chi; Wu, Dung Chi; CHIEN-YU CHEN ; CHANG-HAO YANG ; CHUNG-MAY YANG ; PEI-LUNG CHEN ; TA-CHING CHEN Retina43
52021Clinical implications of sequential MRD monitoring by NGS at 2 time points after chemotherapy in patients with AMLCHENG-HONG TSAI ; JIH-LUH TANG ; FENG-MING TIEN ; YUAN-YEH KUO ; Wu D.-C.; CHIEN-CHIN LIN ; Tseng M.-H.; Peng Y.-L.; Hou M.-F.; Chuang Y.-K.; Liu M.-C.; CHIA-WEN LIU ; MING YAO ; LIANG-IN LIN ; WEN-CHIEN CHOU ; CHIEN-YU CHEN ; HSIN-AN HOU ; HWEI-FANG TIEN Blood Advances2727
62021The Phosphoprotein Synapsin Ia Regulates the Kinetics of Dense-Core Vesicle ReleaseHui-Ju Yang; Pin-Chun Chen; Chien-Ting Huang; Tzu-Lin Cheng; Sheng-Ping Hsu; CHIEN-YU CHEN ; Juu-Chin Lu; Chih-Tien Wang Journal of Neuroscience32
72021Evaluation of using WGS/WES to characterize ACMG actionable genes in genetic testing reportsYang W.-T.; Wu D.-C.; Liu J.-F.; JIN-BON HONG ; Wu J.-T.; PEI-LUNG CHEN ; CHIEN-YU CHEN Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 202100
82021DockCoV2: A drug database against SARS-CoV-2Chen T.-F; Chang Y.-C; Hsiao Y; Lee K.-H; Hsiao Y.-C; Lin Y.-H; Tu Y.-C.E; Huang H.-C; Chen C.-Y; CHIEN-YU CHEN ; Juan, H.-F. Nucleic Acids Research3831
92021Connecting MHC-I-binding motifs with HLA alleles via deep learningLee K.-H; Chang Y.-C; Chen T.-F; Juan H.-F ; Tsai H.-K; CHIEN-YU CHEN Communications Biology7
102020Comprehensive Study of Keywords for Sequence-Based Automatic Annotation of Protein FunctionsLi Y.-C; Lin M.-J; Huang X.-X; CHIEN-YU CHEN ; YI-CHANG LU Proceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 202000
112020Integrative analyses of noncoding RNAs reveal the potential mechanisms augmenting tumor malignancy in lung adenocarcinomaShih, J.-H.; Chen, H.-Y.; Lin, S.-C.; Yeh, Y.-C.; Shen, R.; Lang, Y.-D.; Wu, D.-C.; CHIEN-YU CHEN ; Chen, R.-H.; Chou, T.-Y.; Jou, Y.-S.Nucleic acids research2322
122020GenEpi: Gene-based epistasis discovery using machine learningChang, Y.-C.; Wu, J.-T.; Hong, M.-Y.; Tung, Y.-A.; Hsieh, P.-H.; Yee, S.W.; Giacomini, K.M.; Oyang, Y.-J.; CHIEN-YU CHEN ; YEN-JEN OYANG BMC Bioinformatics2120
132019Incorporation of long non-coding RNA expression profile in the 2017 ELN risk classification can improve prognostic prediction of acute myeloid leukemia patientsCHENG-HONG TSAI ; CHI-YUAN YAO ; FENG-MING TIEN ; JIH-LUH TANG ; Kuo, Yuan-Yeh; Chiu, Yu-Chiao; CHIEN-CHIN LIN ; Tseng, Mei-Hsuan; Peng, Yen-Ling; Liu, Ming-Chih; Liu, Chia-Wen; MING YAO ; LIANG-IN LIN ; WEN-CHIEN CHOU ; CHIEN-YU CHEN ; HSIN-AN HOU ; HWEI-FANG TIEN EBioMedicine2122
142019Author Correction: Effect of de novo transcriptome assembly on transcript quantification (Scientific Reports, (2019), 9, 1, (8304), 10.1038/s41598-019-44499-3)Hsieh, P.-H.; Oyang, Y.-J.; CHIEN-YU CHEN ; YEN-JEN OYANG Scientific Reports00
152019The complete mitochondrial genome of wild mung bean (Vigna radiata var. sublobata TC1966)Lin, C.-P.; Schafleitner, R..; HSIAO-FENG LO ; CHIEN-YU CHEN Mitochondrial DNA Part B: Resources
162019Predicting pathogenic non-coding variants on imbalanced data set using cluster ensemble samplingChuang, K.-W.; CHIEN-YU CHEN Proceedings - 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering, BIBE 2019
172019Effect of de novo transcriptome assembly on transcript quantificationHsieh P.-H.; Oyang Y.-J.; CHIEN-YU CHEN ; YEN-JEN OYANG Scientific Reports2321
182018HAHap: a read-based haplotyping method using hierarchical assemblyLin, Yu-Yu; Wu, Ping Chun; Chen, Pei-Lung; Oyang, Yen-Jen; CHIEN-YU CHEN ; YEN-JEN OYANG PeerJ00
192018Whole-genome de novo sequencing reveals unique genes that contributed to the adaptive evolution of the Mikado pheasantLee, C.-Y., Hsieh, P.-H., Chiang, L.-M., Chattopadhyay, A., Li, K.-Y., Lee, Y.-F., Lu, T.-P., Lai, L.-C., Lin, E.-C., Lee, H., Ding, S.-T., Tsai, M.-H., Chen, C.-Y., Chuang, E.Y.; Hsieh, P.-H.; Chiang, L.-M.; Chattopadhyay, A.; Li, K.-Y.; Lee, Y.-F.; TZU-PIN LU ; LIANG-CHUAN LAI ; Lin, E.-C.; Lee, H.; Ding, S.-T. ; Tsai, M.-H.; Chen, C.-Y.; Chuang, E.Y.; EN-CHUNG LIN ; CHIEN-YU CHEN ; MONG-HSUN TSAI ; HSINYU LEE GigaScience98
202017A novel missense variant in the nuclear localization signal of POU4F3 causes autosomal dominant non-syndromic hearing lossLin Y.-H.; Lin Y.-H.; Lu Y.-C.; TIEN-CHEN LIU ; Chen C.-Y.; Hsu C.-J.; PEI-LUNG CHEN ; CHIEN-YU CHEN ; CHEN-CHI WU Scientific Reports2019
212016ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-elementChen, Hsing Yu; Hsieh, En Jung; Cheng, Mei Chun; CHIEN-YU CHEN ; Hwang, Shih Ying; MEI-CHUN CHENG The New phytologist9791
222016Identification and preliminary characterization of chemosensory perception-associated proteins in the melon fly Bactrocera cucurbitae using RNA-seqElfekih S.; Chen C.-Y.; Hsu J.-C.; Belcaid M.; CHIEN-YU CHEN ; JU-CHUN HSU Scientific Reports2524
232016Identification of single nucleotide polymorphism markers associated with resistance to bruchids (Callosobruchus spp.) in wild mungbean (Vigna radiata var. sublobata) and cultivated V. radiata through genotyping by sequencing and quantitative trait locus analysisSchafleitner, Roland; Huang, Shu-Mei; Chu, Shui-Hui; Yen, Jo-Yi; Lin, Chen-Yu; Yan, Miao-Rong; Krishnan, Bharath; Liu, Mao-Sen; Lo, Hsiao-Feng; Chen, Chien-Yu; Chen, Long-Fang O.; Wu, Dung-Chi; Bui, Thu-Giang Thi; Ramasamy, Srinivasan; Tung, Chih-Wei; HSIAO-FENG LO ; CHIH-WEI TUNG ; CHIEN-YU CHEN BMC plant biology4936
242016The complete mitochondrial genome of mungbean Vigna radiata var. radiata NM92 and a phylogenetic analysis of crops in angiospermsLin, Ching-Ping; Lo, Hsiao-Feng; Chen, Chien-Yu; HSIAO-FENG LO ; CHIEN-YU CHEN ; CHAN-PIN LIN Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis45
252016Clinical heterogeneity of LRRK2 p.I2012T mutationFan T.-S.; RUEY-MEEI WU ; PEI-LUNG CHEN ; TA-FU CHEN ; Li H.-Y.; Lin Y.-H.; Chen C.-Y.; Chen M.-L.; CHUN-HWEI TAI ; Lin H.-I.; CHIEN-YU CHEN Parkinsonism and Related Disorders1414
262016Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogasterChen, Mei-Ju May; Chen, Li-Kai; Lin, Yu-Yu; Wu, Dung-Chi; Tung, Yi-An; Liu, Kwei-Yan; Shih, Hsueh-Tzu; Chen, Yi-Jyun; Lin, Yan-Liang; Ma, Li-Ting; Huang, Jian-Long; Wu, Po-Chun; Hong, Ming-Yi; FANG-HUA CHU ; Wu, June-Tai; Li, Wen-Hsiung ; Chen, Chien-Yu BMC Genomics
272016Transcriptomic and Proteomic Research to Explore Bruchid-Resistant Genes in Mungbean Isogenic LinesLin W.-J.; Ko C.-Y.; Liu M.-S.; Kuo C.-Y.; Wu D.-C.; Chen C.-Y.; Schafleitner R.; Chen L.-F.O.; HSIAO-FENG LO ; CHIEN-YU CHEN Journal of Agricultural and Food Chemistry119
282016Discovery of Organophosphate Resistance-Related Genes Associated With Well-known Resistance Mechanisms of Plutella xylostella (L.) (Lepidoptera: Plutellidae) by RNA-SeqHsu, Ju-Chun; Lin, Yu-Yu; Chang, Chia-Che; Hua, Kuo-Hsun; Chen, Mei-Ju May; Huang, Li-Hsin; CHIEN-YU CHEN ; CHUN-CHE CHANG Journal of Economic Entomology1413
292016Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek)Liu, Mao-Sen; Kuo, Tony Chien-Yen; Ko, Chia-Yun; Wu, Dung-Chi; Li, Kuan-Yi; Lin, Wu-Jui; Lin, Ching-Ping; Wang, Yen-Wei; Schafleitner, Roland; HSIAO-FENG LO ; CHIEN-YU CHEN ; Chen, Long-Fang O.BMC plant biology3330
302016Aiolos collaborates with Blimp-1 to regulate the survival of multiple myeloma cellsHung K.-H.; Su S.-T.; Chen C.-Y.; Hsu P.-H.; SHANG-YI HUANG ; Wu W.-J.; Chen M.-J.M.; Chen H.-Y.; Wu P.-C.; Lin F.-R.; Tsai M.-D.; CHIEN-YU CHEN Cell Death and Differentiation2120
312016Crowdsourced estimation of cognitive decline and resilience in Alzheimer's diseaseAllen G.I.; Amoroso N.; Anghel C.; Balagurusamy V.; Bare C.J.; Beaton D.; Bellotti R.; Bennett D.A.; Boehme K.L.; Boutros P.C.; Caberlotto L.; Xu J.; CHIEN-YU CHEN ; Zhan X.; Zhou Y.; Zhu F.; Zhu H.; Zhu S.; Chen, C.-Y.; Caloian C.; Campbell F.; Chaibub Neto E.; Chang Y.-C.; Chen B.; Chen C.-Y.; Chien T.-Y.; Clark T.; Das S.; Davatzikos C.; Deng J.; Dillenberger D.; Dobson R.J.B.; Dong Q.; Doshi J.; Duma D.; Errico R.; Erus G.; Everett E.; Fardo D.W.; Friend S.H.; Fröhlich H.; Gan J.; St George-Hyslop P.; Ghosh S.S.; Glaab E.; Green R.C.; Guan Y.; Hong M.-Y.; Huang C.; Hwang J.; Ibrahim J.; Inglese P.; Iyappan A.; Jiang Q.; Katsumata Y.; Kauwe J.S.K.; Klein A.; Kong D.; Krause R.; Lalonde E.; Lauria M.; Lee E.; Lin X.; Liu Z.; Livingstone J.; Logsdon B.A.; Lovestone S.; Ma T.-W.; Malhotra A.; Mangravite L.M.; Maxwell T.J.; Merrill E.; Nagorski J.; Namasivayam A.; Narayan M.; Naz M.; Newhouse S.J.; Norman T.C.; Nurtdinov R.N.; YEN-JEN OYANG ; Pawitan Y.; Peng S.; Peters M.A.; Piccolo S.R.; Praveen P.; Priami C.; Sabelnykova V.Y.; Senger P.; Shen X.; Simmons A.; Sotiras A.; Stolovitzky G.; Tangaro S.; Tateo A.; Tung Y.-A.; Tustison N.J.; Varol E.; Vradenburg G.; Weiner M.W.; Xiao G.; Xie L.; Xie Y.Alzheimer's and Dementia63
322015The effect of red light and far-red light conditions on secondary metabolism in AgarwoodKuo, Chien Yen T.; Chen, Chuan Hung; Chen, Shu Hwa; Lu, I. Hsuan; Chu, Mei Ju; Huang, Li-Chun; Lin, Chung Yen; CHIEN-YU CHEN ; HSIAO-FENG LO ; SHIH-TONG JENG ; Chen, Long-Fang O.BMC Plant Biology3529
332015Exploring Full Potential of Conducting Polymers for Enhancing Light Out-Coupling of OLEDsCHUNG-CHIH WU ; Huang, Yi Hsiang; CHIEN-YU CHEN ; Lee, Wei Kai; Tsai, Wei Lung; Lu, Chun Yang; Jiao, Min; Lin, Chun YuOptics InfoBase Conference Papers0
342015Emergence of differentially regulated pathways associated with the development of regional specificity in chicken skinChang, Kai-Wei et al.; Huang, Nancy A.; Liu, I-Hsuan ; Wang, Yi-Hui; Wu, Ping; Tseng, Yen-Tzu; Hughes, Michael W.; Jiang, Xin; Tsai, Mong-Hsun; Chen, Chien-Yu ; Oyang, Yen-Jen ; MONG-HSUN TSAI ; EN-CHUNG LIN ; SHAU-PING LIN BMC Genomics1010
352015Do organophosphate-based traps reduce control efficiency of resistant tephritid flies?Hsu; J-C.; Li-Hsin Huang; Hai-Tung Feng; W-Y Su; Chen, L.-F.O.; Chen, C.-Y.; JU-CHUN HSU ; CHIEN-YU CHEN Journal of Pest Science77
362015Erratum: The opportunistic marine pathogen Vibrio parahaemolyticus becomes virulent by acquiring a plasmid that expresses a deadly toxin (Proceedings of the National Academy of Sciences of the United States of America (2015) 112 (10798-10803))Lee C.-T. et al.; Chen I.-T.; Yang Y.-T.; Ko T.-P.; Huang Y.-T.; Huang J.-Y.; Huang M.-F.; Lin S.-J.; CHIEN-YU CHEN ; SHIH-SHUN LIN ; Lightner D.V.; Wang H.-C.; Wang A.H.-J.; Wang H.-C.; Hor L.-I.; Lo, C.-F.Proceedings of the National Academy of Sciences of the United States of America138
372015The opportunistic marine pathogen Vibrio parahaemolyticus becomes virulent by acquiring a plasmid that expresses a deadly toxinLee, Chung-Te; Chen, I.-Tung; Yang, Yi-Ting; Ko, Tzu-Ping; Huang, Yun-Tzu; Huang, Jiun-Yan; Huang, Ming-Fen; Lin, Shin-Jen; Chen, Chien-Yu; Lin, Shih-Shun; Lin, Shih-Shuen; Lightner, Donald V.; Wang, Han-Ching; Wang, Andrew H.-J.; Wang, Hao-Ching; Hor, Lien-I.; SHIH-SHUN LIN ; CHIEN-YU CHEN Proceedings of the National Academy of Sciences of the United States of America375358
382015Intellectual disability-associated dBRWD3 regulates gene expression through inhibition of HIRA/YEM-mediated chromatin deposition of histone H3.3Chen W.-Y.; Shih H.-T.; Liu K.-Y.; Shih Z.-S.; Chen L.-K.; Tsai T.-H.; Chen M.-J.; Liu H.; Tan B.C.-M.; CHIEN-YU CHEN ; HSIU-HSIANG LEE ; Loppin B.; Aït‐Ahmed O.; Wu J.-T.EMBO Reports11
392014Identification of cucurbitacins and assembly of a draft genome for Aquilaria agallochaChen, Chuan Hung; Kuo, Tony Chien Yen; Yang, Meng Han; Chien, Ting Ying; Chu, Mei Ju; LI-CHUN HUANG ; CHIEN-YU CHEN ; HSIAO-FENG LO ; SHIH-TONG JENG BMC Genomics3628
402014Draft genome sequences of four strains of Vibrio parahaemolyticus, three of which cause early mortality syndrome/acute hepatopancreatic necrosis disease in shrimp in China and ThailandYang Y.-T.; Chen I.-T.; Lee C.-T.; Chen C.-Y.; Lin S.-S.; Hor L.-I.; Tseng T.-C.; Huang Y.-T.; Sritunyalucksana K.; Thitamadee S.; Wang H.-C.; CHIEN-YU CHEN ; SHIH-SHUN LIN Genome Announcements1170
412014Differential activation of sporamin expression in response to abiotic mechanical wounding and biotic herbivore attack in the sweet potatoRajendran, S.; Lin, I.-W.; Chen, M.-J.; CHIEN-YU CHEN ; Yeh, K.-W.BMC Plant Biology
422013PiDNA: Predicting protein-DNA interactions with structural models.CHIEN-YU CHEN Nucleic acids research1515
432013Comparison of Feature Selection Methods for Cross-Laboratory Microarray AnalysisLiu H.-C.; Peng P.-C.; Hsieh T.-C.; Yeh T.-C.; Lin C.-J.; Chen C.-Y.; Hou J.-Y.; Shih L.-Y.; CHIH-JEN LIN ; CHIEN-YU CHEN IEEE/ACM Transactions on Computational Biology and Bioinformatics1712
442013Evaluation of methods for modeling transcription factor sequence specificityCHIEN-YU CHEN Nature Biotechnology266250
452012Predicting target DNA sequences of DNA-binding proteins based on unbound structuresCHIEN-YU CHEN PLoS ONE2020
462012DBD2BS: Connecting a DNA-binding protein with its binding sitesChien, T.-Y.; Lin, C.-K.; Lin, C.-W.; Weng, Y.-Z.; CHIEN-YU CHEN ; Chang, D.T.-H.Nucleic Acids Research
472012De novo motif discovery facilitates identification of interactions between transcription factors in Saccharomyces cerevisiaeChen, M.M.; Chou, L.; Hsieh, T.; Lee, D.; Liu, K.; Yu, C.; Oyang, Y.; Tsai, H.-K.; CHIEN-YU CHEN ; YEN-JEN OYANG Bioinformatics1314
482012Discovery of transcription factor binding sites and its applications in cancer studyCHIEN-YU CHEN Systems Biology: Applications in Cancer-Related Research
492012Discovery of genes related to insecticide resistance in Bactrocera dorsalis by functional genomic analysis of a De novo assembled transcriptomeJU-CHUN HSU ; Chien, T.-Y.; Hu, C.-C.; Chen, M.-J.M.; Wu, W.-J.; Feng, H.-T.; Haymer, D.S.; CHIEN-YU CHEN PLoS ONE
502011Blue light-emitting and electron-transporting materials based on dialkyl-functionlized anthracene imidazophenanthrolinesLee, Jiann Fong; Chen, Yung Chung; Lin, Jiann T.Suen; CHUNG-CHIH WU ; CHIEN-YU CHEN ; CHI-AN DAI ; CHI-YANG CHAO ; HSUEN-LI CHEN ; WEN-BIN LIAU Tetrahedron2524
512011WildSpan: Mining structured motifs from protein sequencesCHIEN-YU CHEN Algorithms for Molecular Biology 88
522011Predicting DNA-binding locations and orientation on proteins using knowledge-based learning of geometric propertiesCHIEN-YU CHEN Proteome Science 00
532011Enhancement of Reversible Rotation Journal Bearing Performance Using Elliptical GroovesYen, Ruey-Hor; Chen, Chien-Yu Journal of Tribology77
542011Spectral element analysis of herringbone-grooved journal bearings with groove-ridge discontinuityChen, Chien-Yu ; Yen, Ruey-Hor; Chang, Chia-ChinInternational Journal for Numerical Methods in Fluids88
552011Expression of HOXB genes is significantly different in acute myeloid leukemia with a partial tandem duplication of MLL vs. a MLL translocation: A cross-laboratory studyCHIH-JEN LIN ; CHIEN-YU CHEN ; Liu, H.-C.; Shih, L.-Y.; May Chen, M.-J.; Wang, C.-C.; Yeh, T.-C.; Lin, T.-H.; Chen, C.-Y.; Lin, C.-J.; Liang, D.-C.; CHIH-JEN LIN ; CHIEN-YU CHEN Cancer Genetics 
562010Design and Experimental Verification of Novel Hydrodynamic Grooved Journal BearingLiu, Chien-Sheng; Tsai, Meng-Che; Yen, Ruey-Hor; Lin, Psang-Dain; Chen, Chien-Yu The Journal of the Chinese Society of Mechanical Engineers 
572010Predicting DNA-binding locations and orientation on proteins using knowledge-based learning of geometric propertiesCHIEN-YU CHEN 2010 IEEE International Conference on Bioinformatics and Biomedicine00
582010含新型橢圓形溝槽之液體動壓軸承分析陳建佑; Chen, Chien-Yu 
592010Sequence composition analysis on arsenic-binding proteins in human cellsTung, Y.-A.; Chang, Y.-Y.; RONG-NAN HUANG ; CHIEN-YU CHEN 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops
602009seeMotif: Exploring and visualizing sequence motifs in 3D structuresChang, Darby Tien-Hao; CHIEN-YU CHEN ; Chien, Ting-Ying; Chen, Chien-Yu Nucleic Acids Research32
612009Statistical identification of gene association by CID in application of constructing ER regulatory networkLI-YU LIU ; CHIEN-YU CHEN ; Chen M.-J.M.; Tsai M.-S.; Lee C.-H.S.; Phang T.L.; Chang L.-Y.; WEN-HUNG KUO ; HSIAO-LIN HWA ; HUANG-CHUN LIEN ; Jung S.-M.; Lin Y.-S.; KING-JEN CHANG ; FON-JOU HSIEH BMC Bioinformatics109
622008應用RFID於肉種雞經營管理之研究周瑞仁; 周楚洋 ; 陳倩瑜 ; 姜延年
632008Erratum: MAGIIC-PRO: Detecting functional signatures by efficient discovery of long patterns in protein sequences (Nucleic Acids Research (2007) vol. 34 (W356-W361))CHIEN-YU CHEN Nucleic Acids Research33
642008Prediction of protein secondary structures with a novel kernel density estimation based classifierChang, D.T.-H.; Ou, Y.-Y.; Hung, H.-G.; Yang, M.-H.; Chen, C.-Y.; YEN-JEN OYANG ; CHIEN-YU CHEN BMC Research Notes80
652008Discovering gapped binding sites of yeast transcription factorsCHIEN-YU CHEN ; Tsai, H.-K.; Hsu, C.-M.; Chen, M.-J.M.; Hung, H.-G.; Huang, G.T.-W.; Li, W.-H.Proceedings of the National Academy of Sciences of the United States of America
662008Cross-generation and cross-laboratory predictions of Affymetrix microarrays by rank-based methodsLiu, Hsi-Che; CHIEN-YU CHEN ; Liu, Yu-Ting; Chu, Cheng-Bang; Liang, Der-Cherng; Shih, Lee-Yung; CHIH-JEN LIN Journal of Biomedical Informatics2018
672007Enhancing protein disorder detection by refined secondary structure predictionCHIEN-YU CHEN Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)1
682007IPDA: Integrated protein disorder analyzerSu, Chung-Tsai; CHIEN-YU CHEN ; Chen, Chien-Yu ; Hsu, Chen-MingNucleic Acids Research4847
692007Identification of hot regions in protein-protein interactions by sequential pattern miningHsu, Chen-Ming; CHIEN-YU CHEN ; Chen, Chien-Yu ; Liu, Baw-Jhiune; Huang, Chih-Chang; Laio, Min-Hung; Lin, Chien-Chieh; Wu, Tzung-LinBMC Bioinformatics4234
702006結合序列分群與特徵探勘演算法提昇兼職蛋白質預測之可靠度　（新制多年期第2年）陳倩瑜 
712006結合序列分群與特徵探勘演算法提昇兼職蛋白質預測之可靠度　（新制多年期第1年）陳倩瑜 
722006Exploiting Homogeneity in Protein Sequence Clusters for Construction of Protein Family HierarchiesChen, Chien-Yu ; Chung, Wen-Chin; Su, Chung-TsaiPattern Recognition75
732006Protein disorder prediction by condensed PSSM considering propensity for order or disorderCHIEN-YU CHEN ; Su, Chung-Tsai; Chen, Chien-Yu ; Ou, Yu-YenBMC Bioinformatics9286
742006MAGIIC-PRO: detecting functional signatures by efficient discovery of long patterns in protein sequencesHsu, Chen-Ming; Chen, Chien-Yu ; Liu, Baw-JhiuneNucleic Acids Research 34: W356-W3611917
752006Pattern classification in DNA microarray data of multiple tumor typesLin, Tsun-Chen; CHIEN-YU CHEN ; Liu, Ru-Sheng; Chen, Chien-Yu ; Chao, Ya-Ting; Chen, Shu-YuanPattern Recognition3834
762006Efficient discovery of structural motifs from protein sequences with combination of flexible intra- and inter-block gap constraintsHsu C.-M.; CHIEN-YU CHEN ; Hsu C.-C.; Liu B.-J.Lecture Notes in Computer Science
772005複合式蛋白質序列分群演算法之研究陳倩瑜 
782005Analysis and Summarization of Correlations in Data Cubes and its Applications in Microarray Data AnalysisChen, Chien-Yu ; Hwang, Shien-Ching; Oyang, Yen-Jen Intelligent Data Analysis 
792005Prediction of outer membrane proteins by support vector machines using combinations of gapped amino acid pair compositionsCHIEN-YU CHEN 5th IEEE Symposium on Bioinformatics and Bioengineering50
802005Data Classification with the Radial Basis Function Network Based on a Novel Kernel Density Estimation AlgorithmOyang, Yen-Jen ; Hwang, Shien-Ching; Ou, Yu-Yen; Chen, Chien-Yu ; Chen, Zhi-WeiIEEE transactions on neural networks162131
812005A statistics-based approach to control the quality of subclusters in incremental gravitational clusteringCHIEN-YU CHEN ; Hwang, S.-C.; Oyang, Yen-Jen Pattern Recognition
822005Data classification with a relaxed model of variable kernel density estimationOyang, Yen-Jen ; Ou, Y.-Y.; Hwang, S.-C.; CHIEN-YU CHEN ; Chang, D.T.-H.Proceedings of the International Joint Conference on Neural Networks
832005Detecting homogeneity in protein sequence clusters for automatic functional annotation and noise detectionCHIEN-YU CHEN Emerging Information Technology Conference 2005
842005A novel radial basis function network classifier with centers set by hierarchical clusteringOu, Y.-Y.; Oyang, Yen-Jen ; Chen, Chien-Yu Proceedings of the International Joint Conference on Neural Networks
852004ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures.Chang, Darby Tien-Hau; CHIEN-YU CHEN ; Chung, Wen-Chin; Oyang, Yen-Jen ; Juan, Hsueh-Fen ; Huang, Hsuan-ChengNucleic Acids Research2017
862004An efficient mechanism for prediction of protein-ligand interactions based on analysis of protein tertiary substructuresChang, Darby Tien-Hau; Chen, Chien-Yu ; Oyang, Yen-Jen ; Juan, Hsueh-Fen ; Huang, Hsuan-ChengFourth IEEE Symposium on Bioinformatics and Bioengineering3224
872004Image Reconstruction with Improved Super-Resolution AlgorithmCHEN, CHIEN-YU ; KUO, YU-CHUAN; FUH, CHIOU-SHANN International Journal of Pattern Recognition and Artificial Intelligence32
882004Incremental generation of summarized clustering hierarchy for protein family analysisChen, Chien-Yu ; Oyang, Yen-Jen ; Juan, Hsueh-Fen Bioinformatics43
892004A NOVEL LEARNINGALGORITHM FOR DATA CLASSIFICATION WITH RADIAL BASIS FUNCTION NETWORKSOyang, Yen-Jen ; Hwang, Shien-Ching; Ou, Yu-Yen; Chen, Chien-Yu ; Chen, Zhi-Wei
902003Expediting Model Selection for Support Vector Machines Based on Data ReductionOu, Yu-Yen; Chen, Chien-Yu ; Hwang, Shien-Ching; Oyang, Yen-Jen IEEE International Conference on Systems, Man and Cybernetics 
912003Expediting protein structural analysis with an efficient kernel density estimation algorithm.Oyang, Yen-Jen; Chang, Darby Tien-Hao; Chen, Chien-Yu; YEN-JEN OYANG ; CHIEN-YU CHEN Fifth International Symposium on Multimedia Software Engineering, ISMSE 2003, Taichung, Taiwan, December 10-12, 200320
922003Design of an incremental clustering package for protein function and family analysis.Chen, Chien-Yu; Juan, Hsueh-Fen ; Hsiao, Po-Jen; Chen, Shui-Tein; Tseng, Hsiang-Wen; CHIEN-YU CHEN ; Oyang, Yen-Jen ; YEN-JEN OYANG Fifth International Symposium on Multimedia Software Engineering, ISMSE 2003, Taichung, Taiwan, December 10-12, 200300
932002A novel learning algorithm for data classification with radial basis function networksYEN-JEN OYANG ; Hwang, Shien-Ching; Ou, Yu-Yen; Chen, Chien-Yu ; Chen, Zhi-Wei9th International Conference on Neural Information Processing80
942002Analysis and summarization of correlations in data cubes.Chen, Chien-Yu; Hwang, Shien-Ching; CHIEN-YU CHEN ; YEN-JEN OYANG Data Mining and Knowledge Discovery: Theory, Tools, and Technology IV, Orlando, FL, USA, April 1, 200200
952002Data Classification with Radial Basis Function Networks Based on a Novel Kernel Density Estimation AlgorithmOyang, Yen-Jen ; Hwang, Shien-Ching; Ou, Yu-Yen; Chen, Chien-Yu ; Chen, Zhi-Wei
962002An Incremental Hierarchical Data Clustering Algorithm Based on Gravity TheoryChen, Chien-Yu ; Hwang, Shien-Ching; Oyang, Yen-Jen Lecture Notes in Computer Science
972001A Programmable Parallel VLSI Architecture for 2-D Discrete Wavelet TransformChen, Chien-Yu ; Yang, Zhong-Lan; Wang, Tu-Chih; Chen, Liang-GeeThe Journal of 
982000A programmable VLSI architecture for 2-D discrete wavelet transformChen, Chien-Yu ; Yang, Zhong-Lan; Wang, Tu-Chih; LIANG-GEE CHEN The IEEE International Symposium on Circuits and Systems, ISCAS 2000 Geneva.120
99-Supplementary Article of ProteMiner-SSMChang, Tien-Hau; Chen, Chien-Yu ; Chung, Wen-Chin; Oyang, Yen-Jen ; Juan, Hsueh-Fen ; Huang, Hsuan-Cheng